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4jjn

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==Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome==
==Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome==
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<StructureSection load='4jjn' size='340' side='right' caption='[[4jjn]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
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<StructureSection load='4jjn' size='340' side='right'caption='[[4jjn]], [[Resolution|resolution]] 3.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4jjn]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_s288c Saccharomyces cerevisiae s288c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JJN FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4jjn]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JJN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JJN FirstGlance]. <br>
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</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HHT1, HHT2, Histone H3, N2749, SIN2, YBR010W, YBR0201, YNL031C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c]), HHF1, HHF2, Histone H4, N2752, YBR009C, YBR0122, YNL030W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c]), H2A2, Histone H2A.2, HTA2, YBL003C, YBL0103 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c]), H2B2, Histone H2B.2, HTB2, YBL002W, YBL0104 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c]), CMT1, L9753.10, MAR2, SIR3, STE8, YLR442C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Saccharomyces cerevisiae S288c])</td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.09&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jjn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jjn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jjn RCSB], [http://www.ebi.ac.uk/pdbsum/4jjn PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jjn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jjn OCA], [https://pdbe.org/4jjn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jjn RCSB], [https://www.ebi.ac.uk/pdbsum/4jjn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jjn ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/H3_YEAST H3_YEAST]
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The regulated binding of effector proteins to the nucleosome plays a central role in the activation and silencing of eukaryotic genes. How this binding changes the properties of chromatin to mediate gene activation or silencing is not fully understood. Here we provide evidence that association of the budding yeast silent information regulator 3 (Sir3) silencing protein with the nucleosome induces a conformational change in the amino terminus of histone H4 that promotes interactions between the conserved H4 arginines 17 and 19 (R17 and R19) and nucleosomal DNA. Substitutions of H4R17 and R19 with alanine abolish silencing in vivo, but have little or no effect on binding of Sir3 to nucleosomes or histone H4 peptides in vitro. Furthermore, in both the previously reported crystal structure of the Sir3-bromo adjacent homology (BAH) domain bound to the Xenopus laevis nucleosome core particle and the crystal structure of the Sir3-BAH domain bound to the yeast nucleosome core particle described here, H4R17 and R19 make contacts with nucleosomal DNA rather than with Sir3. These results suggest that Sir3 binding generates a more stable nucleosome by clamping H4R17 and R19 to nucleosomal DNA, and raise the possibility that such induced changes in histone-DNA contacts play major roles in the regulation of chromatin structure.
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Heterochromatin protein Sir3 induces contacts between the amino terminus of histone H4 and nucleosomal DNA.,Wang F, Li G, Altaf M, Lu C, Currie MA, Johnson A, Moazed D Proc Natl Acad Sci U S A. 2013 May 6. PMID:23650358<ref>PMID:23650358</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==See Also==
==See Also==
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*[[Histone|Histone]]
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*[[Histone 3D structures|Histone 3D structures]]
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Saccharomyces cerevisiae s288c]]
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[[Category: Large Structures]]
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[[Category: Currie, M]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Johnson, A]]
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[[Category: Currie M]]
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[[Category: Li, G]]
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[[Category: Johnson A]]
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[[Category: Lu, C]]
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[[Category: Li G]]
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[[Category: Moazed, D]]
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[[Category: Lu C]]
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[[Category: Mohammed, A]]
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[[Category: Moazed D]]
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[[Category: Wang, F]]
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[[Category: Mohammed A]]
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[[Category: Bah domain]]
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[[Category: Wang F]]
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[[Category: Dna binding protein-dna complex]]
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[[Category: Silencing]]
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Current revision

Crystal structure of heterochromatin protein Sir3 in complex with a silenced yeast nucleosome

PDB ID 4jjn

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