This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sfj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:16, 23 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sfj.gif|left|200px]]
 
-
{{Structure
+
==2.4A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, with 3-dehydroquinate bound==
-
|PDB= 1sfj |SIZE=350|CAPTION= <scene name='initialview01'>1sfj</scene>, resolution 2.40&Aring;
+
<StructureSection load='1sfj' size='340' side='right'caption='[[1sfj]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=DHK:3-DEHYDROSHIKIMATE'>DHK</scene>
+
<table><tr><td colspan='2'>[[1sfj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_MRSA252 Staphylococcus aureus subsp. aureus MRSA252]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SFJ FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/3-dehydroquinate_dehydratase 3-dehydroquinate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.10 4.2.1.10]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
|GENE= aroD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHK:3-DEHYDROSHIKIMATE'>DHK</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sfj OCA], [https://pdbe.org/1sfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sfj RCSB], [https://www.ebi.ac.uk/pdbsum/1sfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sfj ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AROD_STAAR AROD_STAAR]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sf/1sfj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sfj ConSurf].
 +
<div style="clear:both"></div>
-
'''2.4A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, with 3-dehydroquinate bound'''
+
==See Also==
-
 
+
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1SFJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SFJ OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Staphylococcus aureus subsp. aureus MRSA252]]
-
==Reference==
+
[[Category: Hawkins AR]]
-
Crystal structures of Staphylococcus aureus type I dehydroquinase from enzyme turnover experiments., Nichols CE, Lockyer M, Hawkins AR, Stammers DK, Proteins. 2004 Aug 15;56(3):625-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15229896 15229896]
+
[[Category: Lockyer M]]
-
[[Category: 3-dehydroquinate dehydratase]]
+
[[Category: Nichols CE]]
-
[[Category: Single protein]]
+
[[Category: Stammers DK]]
-
[[Category: Staphylococcus aureus]]
+
-
[[Category: Hawkins, A R.]]
+
-
[[Category: Lockyer, M.]]
+
-
[[Category: Nichols, C E.]]
+
-
[[Category: Stammers, D K.]]
+
-
[[Category: DHK]]
+
-
[[Category: 3-dehydroquinase]]
+
-
[[Category: 3-dehydroquinate]]
+
-
[[Category: enzyme turnover]]
+
-
[[Category: shikimate pathway]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:04:16 2008''
+

Current revision

2.4A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, with 3-dehydroquinate bound

PDB ID 1sfj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1sfj"
Personal tools