This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1shn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:32, 1 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1shn.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of shrimp alkaline phosphatase with phosphate bound==
-
|PDB= 1shn |SIZE=350|CAPTION= <scene name='initialview01'>1shn</scene>, resolution 2.15&Aring;
+
<StructureSection load='1shn' size='340' side='right'caption='[[1shn]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[1shn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pandalus_borealis Pandalus borealis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SHN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SHN FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Alkaline_phosphatase Alkaline phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.1 3.1.3.1]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1shn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1shn OCA], [https://pdbe.org/1shn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1shn RCSB], [https://www.ebi.ac.uk/pdbsum/1shn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1shn ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9BHT8_PANBO Q9BHT8_PANBO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sh/1shn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1shn ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of shrimp alkaline phosphatase with phosphate bound'''
+
==See Also==
-
 
+
*[[Alkaline phosphatase 3D structures|Alkaline phosphatase 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
Alkaline phosphatases (APs) are homodimeric metalloenzymes that catalyze the hydrolysis and transphosphorylation of phosphate monoesters. Each monomer contains a metal-binding triad that for optimal activity is usually occupied by two zinc ions and one magnesium ion. The recently determined crystal structure of cold-active shrimp alkaline phosphatase (SAP) was, however, fully occupied by zinc ions. This paper describes a metal-exchange experiment in which the zinc ion in one binding site (referred to as the M3 site) is replaced by magnesium. Crystal structures revealed a concomitant structural change: the metal exchange causes movement of a ligating histidine into a conformation in which it does not coordinate to the metal ion. The M3 site is relevant to catalysis: its occupation by magnesium is postulated to favour catalysis and it has been suggested to be a regulatory site for other APs. Further crystallographic studies show that ligand binding can induce a conformational change of an active-site arginine from a 'non-docked' (non-interacting) to a 'docked' conformation (interacting with the ligand). The first conformation has only been observed in SAP, while the latter is common in available AP structures. The observation that the arginine does not always bind the substrate may explain the increased catalytic efficiency that is generally observed for cold-active enzymes.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1SHN is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pandalus_borealis Pandalus borealis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SHN OCA].
+
-
 
+
-
==Reference==
+
-
Ligand-binding and metal-exchange crystallographic studies on shrimp alkaline phosphatase., de Backer MM, McSweeney S, Lindley PF, Hough E, Acta Crystallogr D Biol Crystallogr. 2004 Sep;60(Pt 9):1555-61. Epub 2004, Aug 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15333925 15333925]
+
-
[[Category: Alkaline phosphatase]]
+
[[Category: Pandalus borealis]]
[[Category: Pandalus borealis]]
-
[[Category: Single protein]]
+
[[Category: Hough E]]
-
[[Category: Backer, M M.E de.]]
+
[[Category: Lindley PF]]
-
[[Category: Hough, E.]]
+
[[Category: McSweeney S]]
-
[[Category: Lindley, P F.]]
+
[[Category: De Backer MME]]
-
[[Category: McSweeney, S.]]
+
-
[[Category: NAG]]
+
-
[[Category: PO4]]
+
-
[[Category: SO4]]
+
-
[[Category: ZN]]
+
-
[[Category: alkaline phosphatase]]
+
-
[[Category: beta sheet]]
+
-
[[Category: cold-active]]
+
-
[[Category: hydrolase]]
+
-
[[Category: metal triad]]
+
-
[[Category: phosphate]]
+
-
[[Category: phosphomonoester]]
+
-
[[Category: shrimp]]
+
-
[[Category: zinc]]
+
-
[[Category: zinc triad]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:05:03 2008''
+

Current revision

Crystal structure of shrimp alkaline phosphatase with phosphate bound

PDB ID 1shn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1shn"
Personal tools