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4gwt

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==Structure of racemic Pin1 WW domain cocrystallized with DL-malic acid==
==Structure of racemic Pin1 WW domain cocrystallized with DL-malic acid==
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<StructureSection load='4gwt' size='340' side='right' caption='[[4gwt]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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<StructureSection load='4gwt' size='340' side='right'caption='[[4gwt]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4gwt]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GWT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GWT FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4gwt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GWT FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LMR:(2S)-2-HYDROXYBUTANEDIOIC+ACID'>LMR</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2kcf|2kcf]], [[2idh|2idh]], [[4gwv|4gwv]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMR:(2S)-2-HYDROXYBUTANEDIOIC+ACID'>LMR</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gwt OCA], [https://pdbe.org/4gwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gwt RCSB], [https://www.ebi.ac.uk/pdbsum/4gwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gwt ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gwt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gwt RCSB], [http://www.ebi.ac.uk/pdbsum/4gwt PDBsum]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/PIN1_HUMAN PIN1_HUMAN] Essential PPIase that regulates mitosis presumably by interacting with NIMA and attenuating its mitosis-promoting activity. Displays a preference for an acidic residue N-terminal to the isomerized proline bond. Catalyzes pSer/Thr-Pro cis/trans isomerizations. Down-regulates kinase activity of BTK. Can transactivate multiple oncogenes and induce centrosome amplification, chromosome instability and cell transformation. Required for the efficient dephosphorylation and recycling of RAF1 after mitogen activation.<ref>PMID:15664191</ref> <ref>PMID:16644721</ref> <ref>PMID:21497122</ref>
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The human Pin1 WW domain is a small autonomously folding protein that has been useful as a model system for biophysical studies of beta-sheet folding. This domain has resisted previous attempts at crystallization for X-ray diffraction studies, perhaps because of intrinsic conformational flexibility that interferes with the formation of a crystal lattice. Here, the crystal structure of the human Pin1 WW domain has been obtained via racemic crystallization in the presence of small-molecule additives. Both enantiomers of a 36-residue variant of the Pin1 WW domain were synthesized chemically, and the L- and D-polypeptides were combined to afford diffracting crystals. The structural data revealed packing interactions of small carboxylic acids, either achiral citrate or a D,L mixture of malic acid, with a mobile loop region of the WW-domain fold. These interactions with solution additives may explain our success in crystallization of this protein racemate. Molecular-dynamics simulations starting from the structure of the Pin1 WW domain suggest that the crystal structure closely resembles the conformation of this domain in solution. The structural data presented here should provide a basis for further studies of this important model system.
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Evidence for small-molecule-mediated loop stabilization in the structure of the isolated Pin1 WW domain.,Mortenson DE, Kreitler DF, Yun HG, Gellman SH, Forest KT Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2506-12. doi:, 10.1107/S090744491302444X. Epub 2013 Nov 19. PMID:24311591<ref>PMID:24311591</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==See Also==
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</div>
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*[[Peptidyl-prolyl cis-trans isomerase 3D structures|Peptidyl-prolyl cis-trans isomerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Peptidylprolyl isomerase]]
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[[Category: Homo sapiens]]
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[[Category: Forest, K T]]
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[[Category: Large Structures]]
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[[Category: Gellman, S H]]
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[[Category: Forest KT]]
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[[Category: Mortenson, D E]]
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[[Category: Gellman SH]]
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[[Category: Yun, H G]]
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[[Category: Mortenson DE]]
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[[Category: Proline phosphoser/thr binding]]
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[[Category: Yun HG]]
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[[Category: Protein binding]]
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[[Category: Racemic crystallization]]
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[[Category: Ww domain]]
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Current revision

Structure of racemic Pin1 WW domain cocrystallized with DL-malic acid

PDB ID 4gwt

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