4nvg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:35, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Predicting protein conformational response in prospective ligand discovery==
==Predicting protein conformational response in prospective ligand discovery==
-
<StructureSection load='4nvg' size='340' side='right' caption='[[4nvg]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
+
<StructureSection load='4nvg' size='340' side='right'caption='[[4nvg]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4nvg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NVG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4nvg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_RM11-1a Saccharomyces cerevisiae RM11-1a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NVG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NVG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2N9:ETHYL+4-AMINOQUINOLINE-3-CARBOXYLATE'>2N9</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.742&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4nva|4nva]], [[4nvb|4nvb]], [[4nvc|4nvc]], [[4nvd|4nvd]], [[4nve|4nve]], [[4nvf|4nvf]], [[4nvh|4nvh]], [[4nvi|4nvi]], [[4nvj|4nvj]], [[4nvk|4nvk]], [[4nvl|4nvl]], [[4nvm|4nvm]], [[4nvn|4nvn]], [[4nvo|4nvo]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2N9:ETHYL+4-AMINOQUINOLINE-3-CARBOXYLATE'>2N9</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCP1 CCP CPO YKR066C, SCRG_04081 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=285006 Baker's yeast])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvg OCA], [https://pdbe.org/4nvg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nvg RCSB], [https://www.ebi.ac.uk/pdbsum/4nvg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nvg ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nvg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4nvg RCSB], [http://www.ebi.ac.uk/pdbsum/4nvg PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B3LRE1_YEAS1 B3LRE1_YEAS1]
==See Also==
==See Also==
-
*[[Cytochrome c peroxidase|Cytochrome c peroxidase]]
+
*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Baker's yeast]]
+
[[Category: Large Structures]]
-
[[Category: Fischer, M]]
+
[[Category: Saccharomyces cerevisiae RM11-1a]]
-
[[Category: Fraser, J S]]
+
[[Category: Fischer M]]
-
[[Category: Boltzmann weight]]
+
[[Category: Fraser JS]]
-
[[Category: Dynamic]]
+
-
[[Category: Energy penalty]]
+
-
[[Category: Flexibility]]
+
-
[[Category: Flexible docking]]
+
-
[[Category: Ligand binding]]
+
-
[[Category: Loop]]
+
-
[[Category: Model system]]
+
-
[[Category: Occupancy]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Side-chain]]
+

Current revision

Predicting protein conformational response in prospective ligand discovery

PDB ID 4nvg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools