This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3w34

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:43, 20 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Ternary complex of Thermus thermophilus HB8 uridine-cytidine kinase with substrates==
==Ternary complex of Thermus thermophilus HB8 uridine-cytidine kinase with substrates==
-
<StructureSection load='3w34' size='340' side='right' caption='[[3w34]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
+
<StructureSection load='3w34' size='340' side='right'caption='[[3w34]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3w34]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W34 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W34 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3w34]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W34 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W34 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=CTN:4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE'>CTN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">udk, TTHA0578 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=CTN:4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE'>CTN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Uridine_kinase Uridine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.48 2.7.1.48] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w34 OCA], [https://pdbe.org/3w34 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w34 RCSB], [https://www.ebi.ac.uk/pdbsum/3w34 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w34 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w34 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w34 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3w34 RCSB], [http://www.ebi.ac.uk/pdbsum/3w34 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/URK_THET8 URK_THET8]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thet8]]
+
[[Category: Large Structures]]
-
[[Category: Uridine kinase]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Kuramitsu, S]]
+
[[Category: Kuramitsu S]]
-
[[Category: Masui, R]]
+
[[Category: Masui R]]
-
[[Category: Nakagawa, N]]
+
[[Category: Nakagawa N]]
-
[[Category: Tomoike, F]]
+
[[Category: Tomoike F]]
-
[[Category: Kinase]]
+
-
[[Category: Nucleoside]]
+
-
[[Category: Transferase]]
+

Current revision

Ternary complex of Thermus thermophilus HB8 uridine-cytidine kinase with substrates

PDB ID 3w34

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools