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| - | [[Image:1t99.gif|left|200px]] | |
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| - | {{Structure
| + | ==r106g kdo8ps without substrates== |
| - | |PDB= 1t99 |SIZE=350|CAPTION= <scene name='initialview01'>1t99</scene>, resolution 1.85Å
| + | <StructureSection load='1t99' size='340' side='right'caption='[[1t99]], [[Resolution|resolution]] 1.85Å' scene=''> |
| - | |SITE=
| + | == Structural highlights == |
| - | |LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=CD:CADMIUM ION'>CD</scene> | + | <table><tr><td colspan='2'>[[1t99]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T99 FirstGlance]. <br> |
| - | |ACTIVITY= [http://en.wikipedia.org/wiki/3-deoxy-8-phosphooctulonate_synthase 3-deoxy-8-phosphooctulonate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.55 2.5.1.55]
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> |
| - | |GENE= KDSA, AQ_085 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus]) | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | }}
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t99 OCA], [https://pdbe.org/1t99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t99 RCSB], [https://www.ebi.ac.uk/pdbsum/1t99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t99 ProSAT]</span></td></tr> |
| | + | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/KDSA_AQUAE KDSA_AQUAE] |
| | + | == Evolutionary Conservation == |
| | + | [[Image:Consurf_key_small.gif|200px|right]] |
| | + | Check<jmol> |
| | + | <jmolCheckbox> |
| | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t9/1t99_consurf.spt"</scriptWhenChecked> |
| | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| | + | <text>to colour the structure by Evolutionary Conservation</text> |
| | + | </jmolCheckbox> |
| | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t99 ConSurf]. |
| | + | <div style="clear:both"></div> |
| | | | |
| - | '''r106g kdo8ps without substrates'''
| + | ==See Also== |
| - | | + | *[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]] |
| - | | + | __TOC__ |
| - | ==Overview== | + | </StructureSection> |
| - | A new software suite, called Crystallography & NMR System (CNS), has been developed for macromolecular structure determination by X-ray crystallography or solution nuclear magnetic resonance (NMR) spectroscopy. In contrast to existing structure-determination programs, the architecture of CNS is highly flexible, allowing for extension to other structure-determination methods, such as electron microscopy and solid-state NMR spectroscopy. CNS has a hierarchical structure: a high-level hypertext markup language (HTML) user interface, task-oriented user input files, module files, a symbolic structure-determination language (CNS language), and low-level source code. Each layer is accessible to the user. The novice user may just use the HTML interface, while the more advanced user may use any of the other layers. The source code will be distributed, thus source-code modification is possible. The CNS language is sufficiently powerful and flexible that many new algorithms can be easily implemented in the CNS language without changes to the source code. The CNS language allows the user to perform operations on data structures, such as structure factors, electron-density maps, and atomic properties. The power of the CNS language has been demonstrated by the implementation of a comprehensive set of crystallographic procedures for phasing, density modification and refinement. User-friendly task-oriented input files are available for nearly all aspects of macromolecular structure determination by X-ray crystallography and solution NMR.
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| - | | + | |
| - | ==About this Structure==
| + | |
| - | 1T99 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T99 OCA].
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| - | | + | |
| - | ==Reference==
| + | |
| - | Crystallography & NMR system: A new software suite for macromolecular structure determination., Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL, Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9757107 9757107]
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| - | [[Category: 3-deoxy-8-phosphooctulonate synthase]]
| + | |
| | [[Category: Aquifex aeolicus]] | | [[Category: Aquifex aeolicus]] |
| - | [[Category: Single protein]] | + | [[Category: Large Structures]] |
| - | [[Category: Gatti, D L.]] | + | [[Category: Gatti DL]] |
| - | [[Category: CD]]
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| - | [[Category: PO4]]
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| - | [[Category: beta-alpha-barrel]]
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| - | [[Category: kdo]]
| + | |
| - | [[Category: kdo8p]]
| + | |
| - | [[Category: kdo8p]]
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| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:15:32 2008''
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