1te2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:54, 17 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1te2.gif|left|200px]]
 
-
{{Structure
+
==Putative Phosphatase Ynic from Escherichia coli K12==
-
|PDB= 1te2 |SIZE=350|CAPTION= <scene name='initialview01'>1te2</scene>, resolution 1.76&Aring;
+
<StructureSection load='1te2' size='340' side='right'caption='[[1te2]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene> and <scene name='pdbligand=CA:CALCIUM ION'>CA</scene>
+
<table><tr><td colspan='2'>[[1te2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TE2 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Phosphoglycolate_phosphatase Phosphoglycolate phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.18 3.1.3.18]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
-
|GENE= YNIC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=168807 Escherichia coli O127:H6])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGA:2-PHOSPHOGLYCOLIC+ACID'>PGA</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1te2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1te2 OCA], [https://pdbe.org/1te2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1te2 RCSB], [https://www.ebi.ac.uk/pdbsum/1te2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1te2 ProSAT], [https://www.topsan.org/Proteins/MCSG/1te2 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Putative Phosphatase Ynic from Escherichia coli K12'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/HXPB_ECOLI HXPB_ECOLI] Sugar-phosphate phosphohydrolase that catalyzes the dephosphorylation of D-mannitol 1-phosphate and D-sorbitol 6-phosphate (PubMed:27941785). Also catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate (2dGlu6P); this is a biologically important activity in vivo since it contributes to the elimination of this toxic compound and plays an important role in the resistance of E.coli to 2-deoxyglucose (PubMed:16990279). To a lesser extent, is also able to dephosphorylate mannose 6-phosphate (Man6P), erythrose-4-phosphate, 2-deoxyribose-5-phosphate (2dRib5P), ribose-5-phosphate (Rib5P) and glucose-6-phosphate (Glu6P) in vitro (PubMed:16990279).<ref>PMID:15808744</ref> <ref>PMID:16990279</ref> <ref>PMID:27941785</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1TE2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o127:h6 Escherichia coli o127:h6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TE2 OCA].
+
Check<jmol>
-
[[Category: Escherichia coli o127:h6]]
+
<jmolCheckbox>
-
[[Category: Phosphoglycolate phosphatase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/te/1te2_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Evdokimova, E.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1te2 ConSurf].
-
[[Category: Kim, Y.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
== References ==
-
[[Category: Savchenko, A.]]
+
<references/>
-
[[Category: CA]]
+
__TOC__
-
[[Category: PGA]]
+
</StructureSection>
-
[[Category: mcsg]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: phosphatase]]
+
[[Category: Edwards A]]
-
[[Category: phosphate]]
+
[[Category: Evdokimova E]]
-
[[Category: protein structure initiative]]
+
[[Category: Joachimiak A]]
-
[[Category: psi]]
+
[[Category: Kim Y]]
-
[[Category: structural genomic]]
+
[[Category: Savchenko A]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:17:12 2008''
+

Current revision

Putative Phosphatase Ynic from Escherichia coli K12

PDB ID 1te2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1te2"
Personal tools