1u0m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:43, 14 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1u0m.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of 1,3,6,8-Tetrahydroxynaphthalene Synthase (THNS) from Streptomyces coelicolor A3(2): a Bacterial Type III Polyketide Synthase (PKS) Provides Insights into Enzymatic Control of Reactive Polyketide Intermediates==
-
|PDB= 1u0m |SIZE=350|CAPTION= <scene name='initialview01'>1u0m</scene>, resolution 2.22&Aring;
+
<StructureSection load='1u0m' size='340' side='right'caption='[[1u0m]], [[Resolution|resolution]] 2.22&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[1u0m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U0M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U0M FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.22&#8491;</td></tr>
-
|GENE= SCO1206 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u0m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u0m OCA], [https://pdbe.org/1u0m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u0m RCSB], [https://www.ebi.ac.uk/pdbsum/1u0m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u0m ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure of 1,3,6,8-Tetrahydroxynaphthalene Synthase (THNS) from Streptomyces coelicolor A3(2): a Bacterial Type III Polyketide Synthase (PKS) Provides Insights into Enzymatic Control of Reactive Polyketide Intermediates'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/RPPA_STRCO RPPA_STRCO] Involved in the biosynthesis of melanin but also various secondary metabolites containing a naphthoquinone ring. Catalyzes the iterative condensation of five CoA-linked malonyl units to form a pentaketide intermediate. THNS subsequently catalyzes the dual intramolecular Claisen and aldol condensations of this linear intermediate to produce the fused ring of 1,3,6,8-tetrahydroxynaphthalene (THN).<ref>PMID:12905073</ref> <ref>PMID:15265863</ref>
-
 
+
== Evolutionary Conservation ==
-
==Overview==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
In bacteria, a structurally simple type III polyketide synthase (PKS) known as 1,3,6,8-tetrahydroxynaphthlene synthase (THNS) catalyzes the iterative condensation of five CoA-linked malonyl units to form a pentaketide intermediate. THNS subsequently catalyzes dual intramolecular Claisen and aldol condensations of this linear intermediate to produce the fused ring tetrahydroxynaphthalene (THN) skeleton. The type III PKS-catalyzed polyketide extension mechanism, utilizing a conserved Cys-His-Asn catalytic triad in an internal active site cavity, is fairly well understood. However, the mechanistic basis for the unusual production of THN and dual cyclization of its malonyl-primed pentaketide is obscure. Here we present the first bacterial type III PKS crystal structure, that of Streptomyces coelicolor THNS, and identify by mutagenesis, structural modeling, and chemical analysis the unexpected catalytic participation of an additional THNS-conserved cysteine residue in facilitating malonyl-primed polyketide extension beyond the triketide stage. The resulting new mechanistic model, involving the use of additional cysteines to alter and steer polyketide reactivity, may generally apply to other PKS reaction mechanisms, including those catalyzed by iterative type I and II PKS enzymes. Our crystal structure also reveals an unanticipated novel cavity extending into the "floor" of the traditional active site cavity, providing the first plausible structural and mechanistic explanation for yet another unusual THNS catalytic activity: its previously inexplicable extra polyketide extension step when primed with a long acyl starter. This tunnel allows for selective expansion of available active site cavity volume by sequestration of aliphatic starter-derived polyketide tails, and further suggests another distinct protection mechanism involving maintenance of a linear polyketide conformation.
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u0/1u0m_consurf.spt"</scriptWhenChecked>
-
1U0M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U0M OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==Reference==
+
</jmolCheckbox>
-
Crystal structure of a bacterial type III polyketide synthase and enzymatic control of reactive polyketide intermediates., Austin MB, Izumikawa M, Bowman ME, Udwary DW, Ferrer JL, Moore BS, Noel JP, J Biol Chem. 2004 Oct 22;279(43):45162-74. Epub 2004 Jul 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15265863 15265863]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u0m ConSurf].
-
[[Category: Bacteria]]
+
<div style="clear:both"></div>
-
[[Category: Single protein]]
+
== References ==
-
[[Category: Austin, M B.]]
+
<references/>
-
[[Category: Bowman, M E.]]
+
__TOC__
-
[[Category: Ferrer, J L.]]
+
</StructureSection>
-
[[Category: Izumikawa, M.]]
+
[[Category: Large Structures]]
-
[[Category: Moore, B S.]]
+
[[Category: Austin MB]]
-
[[Category: Noel, J P.]]
+
[[Category: Bowman ME]]
-
[[Category: Udwary, D W.]]
+
[[Category: Ferrer JL]]
-
[[Category: 15P]]
+
[[Category: Izumikawa M]]
-
[[Category: GOL]]
+
[[Category: Moore BS]]
-
[[Category: alpha-beta-alpha-beta-alpha fold]]
+
[[Category: Noel JP]]
-
[[Category: bacterial]]
+
[[Category: Udwary DW]]
-
[[Category: catalytic triad]]
+
-
[[Category: chalcone/stilbene synthase superfamily]]
+
-
[[Category: chs-like]]
+
-
[[Category: malonyl-coa]]
+
-
[[Category: pk]]
+
-
[[Category: tetrahydroxynaphthalene synthase]]
+
-
[[Category: thiolase fold]]
+
-
[[Category: thn]]
+
-
[[Category: type iii polyketide synthase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:25:42 2008''
+

Current revision

Crystal Structure of 1,3,6,8-Tetrahydroxynaphthalene Synthase (THNS) from Streptomyces coelicolor A3(2): a Bacterial Type III Polyketide Synthase (PKS) Provides Insights into Enzymatic Control of Reactive Polyketide Intermediates

PDB ID 1u0m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1u0m"
Personal tools