This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1gcv
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS== | ==DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS== | ||
| - | <StructureSection load='1gcv' size='340' side='right' caption='[[1gcv]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='1gcv' size='340' side='right'caption='[[1gcv]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1gcv]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1gcv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mustelus_griseus Mustelus griseus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GCV FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gcv OCA], [https://pdbe.org/1gcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gcv RCSB], [https://www.ebi.ac.uk/pdbsum/1gcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gcv ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/HBA_MUSGR HBA_MUSGR] Involved in oxygen transport from the lung to the various peripheral tissues. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gc/1gcv_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gc/1gcv_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gcv ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 25: | Line 28: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1gcv" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| Line 32: | Line 36: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Mustelus griseus]] | [[Category: Mustelus griseus]] | ||
| - | [[Category: Adachi | + | [[Category: Adachi SI]] |
| - | [[Category: Chong | + | [[Category: Chong KT]] |
| - | [[Category: Miyazaki | + | [[Category: Miyazaki G]] |
| - | [[Category: Morimoto | + | [[Category: Morimoto H]] |
| - | [[Category: Naoi | + | [[Category: Naoi Y]] |
| - | [[Category: Park | + | [[Category: Park SY]] |
| - | [[Category: Tame | + | [[Category: Tame JRH]] |
| - | [[Category: Yoshimatsu | + | [[Category: Yoshimatsu K]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
DEOXY FORM HEMOGLOBIN FROM MUSTELUS GRISEUS
| |||||||||||
Categories: Large Structures | Mustelus griseus | Adachi SI | Chong KT | Miyazaki G | Morimoto H | Naoi Y | Park SY | Tame JRH | Yoshimatsu K
