This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vl6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 25 January 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vl6.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution==
-
|PDB= 1vl6 |SIZE=350|CAPTION= <scene name='initialview01'>1vl6</scene>, resolution 2.61&Aring;
+
<StructureSection load='1vl6' size='340' side='right'caption='[[1vl6]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1vl6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VL6 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= TM0542 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vl6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vl6 OCA], [https://pdbe.org/1vl6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vl6 RCSB], [https://www.ebi.ac.uk/pdbsum/1vl6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vl6 ProSAT], [https://www.topsan.org/Proteins/JCSG/1vl6 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution'''
+
[https://www.uniprot.org/uniprot/Q9WZ12_THEMA Q9WZ12_THEMA]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1VL6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL6 OCA].
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vl/1vl6_consurf.spt"</scriptWhenChecked>
-
[[Category: Thermotoga maritima msb8]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: jcsg]]
+
</jmolCheckbox>
-
[[Category: joint center for structural genomic]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vl6 ConSurf].
-
[[Category: nad-dependent malic enzyme]]
+
<div style="clear:both"></div>
-
[[Category: protein structure initiative]]
+
__TOC__
-
[[Category: psi]]
+
</StructureSection>
-
[[Category: structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: tm0542]]
+
[[Category: Thermotoga maritima MSB8]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:47:03 2008''
+

Current revision

Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution

PDB ID 1vl6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools