1vl3

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[[Image:1vl3.jpg|left|200px]]
 
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{{Structure
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==DESIGN OF NEW MIMOCHROMES WITH UNIQUE TOPOLOGY==
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|PDB= 1vl3 |SIZE=350|CAPTION= <scene name='initialview01'>1vl3</scene>
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<StructureSection load='1vl3' size='340' side='right'caption='[[1vl3]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=DEU:CO(III)-(DEUTEROPORPHYRIN IX)'>DEU</scene>
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<table><tr><td colspan='2'>[[1vl3]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1l1b 1l1b]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VL3 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=DEU:CO(III)-(DEUTEROPORPHYRIN+IX)'>DEU</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vl3 OCA], [https://pdbe.org/1vl3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vl3 RCSB], [https://www.ebi.ac.uk/pdbsum/1vl3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vl3 ProSAT]</span></td></tr>
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</table>
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'''DESIGN OF NEW MIMOCHROMES WITH UNIQUE TOPOLOGY'''
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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==Overview==
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Peptide-based metalloprotein models represent useful systems to help understand how metalloproteins can support different functions, by the use of similar metal ion cofactors. In order to shed light on the role of the protein matrix in modulating the heme properties, we developed new models: mimochromes. They are pseudo-C(2) symmetric systems, composed of two helical peptides covalently linked to the deuteroporphyrin. The use of C(2) symmetry is particularly advantageous, because it simplifies the design, synthesis and characterization. However, it leaves the problem of possible diastereomeric forms. In the cobalt complex of the first derivative, mimochrome I, Lambda and Delta isomers were indeed experimentally observed. All the insights derived from the Co(III)-mimochrome I structure were used to obtain a re-designed molecule, mimochrome IV. The spectroscopic characterization of the iron and cobalt derivatives suggested the presence of the Lambda isomer as unique species. The NMR solution structure of the diamagnetic Co(III)-mimochrome IV confirmed the ability of the molecule to adopt a unique topology, and revealed the peptide chains to be in helical conformation, as designed. The insertion of intramolecular, inter-chain interactions was successful in favoring the formation of one of the two possible diastereomers. The stereochemically stable structure of mimochrome IV provides an attractive model for modulating the redox potential of the heme, by simple changing the peptide chain composition around the heme.
Peptide-based metalloprotein models represent useful systems to help understand how metalloproteins can support different functions, by the use of similar metal ion cofactors. In order to shed light on the role of the protein matrix in modulating the heme properties, we developed new models: mimochromes. They are pseudo-C(2) symmetric systems, composed of two helical peptides covalently linked to the deuteroporphyrin. The use of C(2) symmetry is particularly advantageous, because it simplifies the design, synthesis and characterization. However, it leaves the problem of possible diastereomeric forms. In the cobalt complex of the first derivative, mimochrome I, Lambda and Delta isomers were indeed experimentally observed. All the insights derived from the Co(III)-mimochrome I structure were used to obtain a re-designed molecule, mimochrome IV. The spectroscopic characterization of the iron and cobalt derivatives suggested the presence of the Lambda isomer as unique species. The NMR solution structure of the diamagnetic Co(III)-mimochrome IV confirmed the ability of the molecule to adopt a unique topology, and revealed the peptide chains to be in helical conformation, as designed. The insertion of intramolecular, inter-chain interactions was successful in favoring the formation of one of the two possible diastereomers. The stereochemically stable structure of mimochrome IV provides an attractive model for modulating the redox potential of the heme, by simple changing the peptide chain composition around the heme.
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==About this Structure==
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Design of a new mimochrome with unique topology.,Lombardi A, Nastri F, Marasco D, Maglio O, De Sanctis G, Sinibaldi F, Santucci R, Coletta M, Pavone V Chemistry. 2003 Nov 21;9(22):5643-54. PMID:14639648<ref>PMID:14639648</ref>
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1VL3 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. This structure supersedes the now removed PDB entry 1L1B. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VL3 OCA].
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==Reference==
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Design of a new mimochrome with unique topology., Lombardi A, Nastri F, Marasco D, Maglio O, De Sanctis G, Sinibaldi F, Santucci R, Coletta M, Pavone V, Chemistry. 2003 Nov 21;9(22):5643-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14639648 14639648]
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[[Category: Protein complex]]
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[[Category: Coletta, M.]]
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[[Category: Lombardi, A.]]
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[[Category: Maglio, O.]]
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[[Category: Marasco, D.]]
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[[Category: Nastri, F.]]
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[[Category: Pavone, V.]]
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[[Category: Sanctis, G De.]]
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[[Category: Santucci, R.]]
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[[Category: Sinibaldi, F.]]
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[[Category: DEU]]
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[[Category: alpha-helix]]
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[[Category: design]]
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[[Category: miniaturized metalloprotein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 14:47:04 2008''
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1vl3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Coletta M]]
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[[Category: De Sanctis G]]
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[[Category: Lombardi A]]
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[[Category: Maglio O]]
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[[Category: Marasco D]]
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[[Category: Nastri F]]
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[[Category: Pavone V]]
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[[Category: Santucci R]]
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[[Category: Sinibaldi F]]

Current revision

DESIGN OF NEW MIMOCHROMES WITH UNIQUE TOPOLOGY

PDB ID 1vl3

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