3kml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:19, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Circular Permutant of the Tobacco Mosaic Virus==
==Circular Permutant of the Tobacco Mosaic Virus==
-
<StructureSection load='3kml' size='340' side='right' caption='[[3kml]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
+
<StructureSection load='3kml' size='340' side='right'caption='[[3kml]], [[Resolution|resolution]] 3.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kml]] is a 17 chain structure with sequence from [http://en.wikipedia.org/wiki/Tobacco_mosaic_virus Tobacco mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KML OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KML FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kml]] is a 17 chain structure with sequence from [https://en.wikipedia.org/wiki/Tobacco_mosaic_virus_(vulgare) Tobacco mosaic virus (vulgare)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KML FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12242 Tobacco mosaic virus])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.011&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kml OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3kml RCSB], [http://www.ebi.ac.uk/pdbsum/3kml PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kml OCA], [https://pdbe.org/3kml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kml RCSB], [https://www.ebi.ac.uk/pdbsum/3kml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kml ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/COAT_TMV COAT_TMV]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
+
[https://www.uniprot.org/uniprot/CAPSD_TMV CAPSD_TMV] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/3kml_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/km/3kml_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kml ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3kml" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Virus coat protein|Virus coat protein]]
+
*[[Tobacco Mosaic Virus|Tobacco Mosaic Virus]]
 +
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Tobacco mosaic virus]]
+
[[Category: Large Structures]]
-
[[Category: Berger, J M]]
+
[[Category: Berger JM]]
-
[[Category: Dedeo, M T]]
+
[[Category: Dedeo MT]]
-
[[Category: Duderstadt, K E]]
+
[[Category: Duderstadt KE]]
-
[[Category: Francis, M B]]
+
[[Category: Francis MB]]
-
[[Category: Capsid protein]]
+
-
[[Category: Cptmvp]]
+
-
[[Category: Permutant]]
+
-
[[Category: Tmv]]
+
-
[[Category: Tmvp]]
+
-
[[Category: Tobacco mosaic virus coat protein]]
+
-
[[Category: Viral protein]]
+
-
[[Category: Virion]]
+

Current revision

Circular Permutant of the Tobacco Mosaic Virus

PDB ID 3kml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools