|
|
(4 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| + | |
| ==Structure of N-terminal domain of a plant Grx== | | ==Structure of N-terminal domain of a plant Grx== |
- | <StructureSection load='2lwf' size='340' side='right' caption='[[2lwf]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='2lwf' size='340' side='right'caption='[[2lwf]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2lwf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LWF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LWF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2lwf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LWF FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GRXS16, At2g38270, F16M14.20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lwf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lwf RCSB], [http://www.ebi.ac.uk/pdbsum/2lwf PDBsum]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lwf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lwf OCA], [https://pdbe.org/2lwf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lwf RCSB], [https://www.ebi.ac.uk/pdbsum/2lwf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lwf ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/GRS16_ARATH GRS16_ARATH]] May only reduce GSH-thiol disulfides, but not protein disulfides (Potential). | + | [https://www.uniprot.org/uniprot/GRS16_ARATH GRS16_ARATH] May only reduce GSH-thiol disulfides, but not protein disulfides (Potential). |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 16: |
Line 17: |
| From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| </div> | | </div> |
| + | <div class="pdbe-citations 2lwf" style="background-color:#fffaf0;"></div> |
| == References == | | == References == |
| <references/> | | <references/> |
Line 21: |
Line 23: |
| </StructureSection> | | </StructureSection> |
| [[Category: Arabidopsis thaliana]] | | [[Category: Arabidopsis thaliana]] |
- | [[Category: Feng, Y]] | + | [[Category: Large Structures]] |
- | [[Category: Glutaredoxin]] | + | [[Category: Feng Y]] |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Nuclease]]
| + | |
| Structural highlights
Function
GRS16_ARATH May only reduce GSH-thiol disulfides, but not protein disulfides (Potential).
Publication Abstract from PubMed
Glutaredoxins (Grxs) have been identified across taxa as important mediators in various physiological functions. A chloroplastic monothiol glutaredoxin, AtGRXS16 from Arabidopsis thaliana, comprises two distinct functional domains, an N-terminal domain (NTD) with GlyIleTyr-TyrIleGly (GIY-YIG) endonuclease motif and a C-terminal Grx module, to coordinate redox regulation and DNA cleavage in chloroplasts. Structural determination of AtGRXS16-NTD showed that it possesses a GIY-YIG endonuclease fold, but the critical residues for the nuclease activity are different from typical GIY-YIG endonucleases. AtGRXS16-NTD was able to cleave lambdaDNA and chloroplast genomic DNA, and the nuclease activity was significantly reduced in AtGRXS16. Functional analysis indicated that AtGRXS16-NTD could inhibit the ability of AtGRXS16 to suppress the sensitivity of yeast grx5 cells to oxidative stress; however, the C-terminal Grx domain itself and AtGRXS16 with a Cys123Ser mutation were active in these cells and able to functionally complement a Grx5 deficiency in yeast. Furthermore, the two functional domains were shown to be negatively regulated through the formation of an intramolecular disulfide bond. These findings unravel a manner of regulation for Grxs and provide insights into the mechanistic link between redox regulation and DNA metabolism in chloroplasts.
Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts.,Liu X, Liu S, Feng Y, Liu JZ, Chen Y, Pham K, Deng H, Hirschi KD, Wang X, Cheng N Proc Natl Acad Sci U S A. 2013 May 20. PMID:23690600[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Liu X, Liu S, Feng Y, Liu JZ, Chen Y, Pham K, Deng H, Hirschi KD, Wang X, Cheng N. Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts. Proc Natl Acad Sci U S A. 2013 May 20. PMID:23690600 doi:10.1073/pnas.1306899110
|