This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vnd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:28, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2==
==Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2==
-
<StructureSection load='3vnd' size='340' side='right' caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
+
<StructureSection load='3vnd' size='340' side='right'caption='[[3vnd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Acam_591 Acam 591]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VND FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vnd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_frigidimarina Shewanella frigidimarina]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VND FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1v7y|1v7y]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trpA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56812 ACAM 591])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [https://pdbe.org/3vnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [https://www.ebi.ac.uk/pdbsum/3vnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vnd ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tryptophan_synthase Tryptophan synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.20 4.2.1.20] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vnd RCSB], [http://www.ebi.ac.uk/pdbsum/3vnd PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR]] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
+
[https://www.uniprot.org/uniprot/H1AFK5_SHEFR H1AFK5_SHEFR] The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.[HAMAP-Rule:MF_00131][SAAS:SAAS00108583]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3vnd" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Tryptophan synthase|Tryptophan synthase]]
+
*[[Tryptophan synthase 3D structures|Tryptophan synthase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Acam 591]]
+
[[Category: Large Structures]]
-
[[Category: Tryptophan synthase]]
+
[[Category: Shewanella frigidimarina]]
-
[[Category: Ishida, M]]
+
[[Category: Ishida M]]
-
[[Category: Matsumura, H]]
+
[[Category: Matsumura H]]
-
[[Category: Mitsuya, D]]
+
[[Category: Mitsuya D]]
-
[[Category: Takano, K]]
+
[[Category: Takano K]]
-
[[Category: Tanaka, S]]
+
[[Category: Tanaka S]]
-
[[Category: Urano, N]]
+
[[Category: Urano N]]
-
[[Category: Cold adaptation]]
+
-
[[Category: Lyase]]
+
-
[[Category: Psychrophilic enzyme]]
+

Current revision

Crystal structure of tryptophan synthase alpha-subunit from the psychrophile Shewanella frigidimarina K14-2

PDB ID 3vnd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3vnd"
Personal tools