We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1x0r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:00, 17 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x0r.gif|left|200px]]
 
-
{{Structure
+
==Thioredoxin Peroxidase from Aeropyrum pernix K1==
-
|PDB= 1x0r |SIZE=350|CAPTION= <scene name='initialview01'>1x0r</scene>, resolution 2.00&Aring;
+
<StructureSection load='1x0r' size='340' side='right'caption='[[1x0r]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
+
<table><tr><td colspan='2'>[[1x0r]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X0R FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Peroxiredoxin Peroxiredoxin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.15 1.11.1.15]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= APE2278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x0r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x0r OCA], [https://pdbe.org/1x0r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x0r RCSB], [https://www.ebi.ac.uk/pdbsum/1x0r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x0r ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Thioredoxin Peroxidase from Aeropyrum pernix K1'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/TDXH_AERPE TDXH_AERPE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1X0R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X0R OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x0/1x0r_consurf.spt"</scriptWhenChecked>
-
Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1., Nakamura T, Yamamoto T, Inoue T, Matsumura H, Kobayashi A, Hagihara Y, Uegaki K, Ataka M, Kai Y, Ishikawa K, Proteins. 2006 Mar 15;62(3):822-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16342268 16342268]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Aeropyrum pernix]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Peroxiredoxin]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x0r ConSurf].
-
[[Category: Ataka, M.]]
+
<div style="clear:both"></div>
-
[[Category: Hagihara, Y.]]
+
__TOC__
-
[[Category: Inoue, T.]]
+
</StructureSection>
-
[[Category: Ishikawa, K.]]
+
[[Category: Aeropyrum pernix K1]]
-
[[Category: Kai, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Kobayashi, A.]]
+
[[Category: Ataka M]]
-
[[Category: Matsumura, H.]]
+
[[Category: Hagihara Y]]
-
[[Category: Nakamura, T.]]
+
[[Category: Inoue T]]
-
[[Category: Uegaki, K.]]
+
[[Category: Ishikawa K]]
-
[[Category: Yamamoto, T.]]
+
[[Category: Kai Y]]
-
[[Category: EDO]]
+
[[Category: Kobayashi A]]
-
[[Category: peroxiredoxin]]
+
[[Category: Matsumura H]]
-
[[Category: thioredoxin fold]]
+
[[Category: Nakamura T]]
-
 
+
[[Category: Uegaki K]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:03:49 2008''
+
[[Category: Yamamoto T]]

Current revision

Thioredoxin Peroxidase from Aeropyrum pernix K1

PDB ID 1x0r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1x0r"
Personal tools