1x99

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[[Image:1x99.gif|left|200px]]
 
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{{Structure
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==X-ray crystal structure of Xerocomus chrysenteron lectin XCL at 1.4 Angstroms resolution, mutated at Q46M, V54M, L58M==
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|PDB= 1x99 |SIZE=350|CAPTION= <scene name='initialview01'>1x99</scene>, resolution 1.40&Aring;
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<StructureSection load='1x99' size='340' side='right'caption='[[1x99]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
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<table><tr><td colspan='2'>[[1x99]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Xerocomellus_chrysenteron Xerocomellus chrysenteron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X99 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X99 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x99 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x99 OCA], [https://pdbe.org/1x99 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x99 RCSB], [https://www.ebi.ac.uk/pdbsum/1x99 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x99 ProSAT]</span></td></tr>
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</table>
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'''X-ray crystal structure of Xerocomus chrysenteron lectin XCL at 1.4 Angstroms resolution, mutated at Q46M, V54M, L58M'''
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== Function ==
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[https://www.uniprot.org/uniprot/Q8WZC9_9AGAM Q8WZC9_9AGAM]
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== Evolutionary Conservation ==
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==Overview==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x9/1x99_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x99 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
A newly defined family of fungal lectins displays no significant sequence similarity to any protein in the databases. These proteins, made of about 140 amino acid residues, have sequence identities ranging from 38% to 65% and share binding specificity to N-acetyl galactosamine. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The crystal structure of XCL to 1.4 A resolution reveals the architecture of this new lectin family. The fold of the protein is not related to any of the several lectin folds documented so far. Unexpectedly, the structure similarity is significant with actinoporins, a family of pore-forming toxins. The specific structural features and sequence signatures in each protein family suggest a potential sugar binding site in XCL and a possible evolutionary relationship between these proteins. Finally, the tetrameric assembly of XCL reveals a complex network of protomer-protomer interfaces and generates a large, hydrated cavity of 1000 A3, which may become accessible to larger solutes after a small conformational change of the protein.
A newly defined family of fungal lectins displays no significant sequence similarity to any protein in the databases. These proteins, made of about 140 amino acid residues, have sequence identities ranging from 38% to 65% and share binding specificity to N-acetyl galactosamine. One member of this family, the lectin XCL from Xerocomus chrysenteron, induces drastic changes in the actin cytoskeleton after sugar binding at the cell surface and internalization, and has potent insecticidal activity. The crystal structure of XCL to 1.4 A resolution reveals the architecture of this new lectin family. The fold of the protein is not related to any of the several lectin folds documented so far. Unexpectedly, the structure similarity is significant with actinoporins, a family of pore-forming toxins. The specific structural features and sequence signatures in each protein family suggest a potential sugar binding site in XCL and a possible evolutionary relationship between these proteins. Finally, the tetrameric assembly of XCL reveals a complex network of protomer-protomer interfaces and generates a large, hydrated cavity of 1000 A3, which may become accessible to larger solutes after a small conformational change of the protein.
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==About this Structure==
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A new lectin family with structure similarity to actinoporins revealed by the crystal structure of Xerocomus chrysenteron lectin XCL.,Birck C, Damian L, Marty-Detraves C, Lougarre A, Schulze-Briese C, Koehl P, Fournier D, Paquereau L, Samama JP J Mol Biol. 2004 Dec 10;344(5):1409-20. PMID:15561152<ref>PMID:15561152</ref>
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1X99 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Xerocomus_chrysenteron Xerocomus chrysenteron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X99 OCA].
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==Reference==
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A new lectin family with structure similarity to actinoporins revealed by the crystal structure of Xerocomus chrysenteron lectin XCL., Birck C, Damian L, Marty-Detraves C, Lougarre A, Schulze-Briese C, Koehl P, Fournier D, Paquereau L, Samama JP, J Mol Biol. 2004 Dec 10;344(5):1409-20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15561152 15561152]
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[[Category: Single protein]]
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[[Category: Xerocomus chrysenteron]]
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[[Category: Birck, C.]]
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[[Category: Damian, L.]]
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[[Category: Fournier, D.]]
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[[Category: Koehl, P.]]
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[[Category: Lougarre, A.]]
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[[Category: Marty-Detraves, C.]]
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[[Category: Paquereau, L.]]
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[[Category: Samama, J P.]]
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[[Category: Schulze-Briese, C.]]
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[[Category: EDO]]
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[[Category: SO4]]
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[[Category: fungal lectin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:06:47 2008''
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1x99" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Xerocomellus chrysenteron]]
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[[Category: Birck C]]
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[[Category: Damian L]]
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[[Category: Fournier D]]
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[[Category: Koehl P]]
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[[Category: Lougarre A]]
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[[Category: Marty-Detraves C]]
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[[Category: Paquereau L]]
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[[Category: Samama JP]]
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[[Category: Schulze-Briese C]]

Current revision

X-ray crystal structure of Xerocomus chrysenteron lectin XCL at 1.4 Angstroms resolution, mutated at Q46M, V54M, L58M

PDB ID 1x99

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