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1j1r
From Proteopedia
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==Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine== | ==Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine== | ||
| - | <StructureSection load='1j1r' size='340' side='right' caption='[[1j1r]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='1j1r' size='340' side='right'caption='[[1j1r]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1j1r]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1j1r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1R FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1r OCA], [https://pdbe.org/1j1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1r RCSB], [https://www.ebi.ac.uk/pdbsum/1j1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1r ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/RIPS_PHYAM RIPS_PHYAM] Inhibits viral infection of plants, and protein synthesis in vitro. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1r_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1r_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j1r ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
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| + | ==See Also== | ||
| + | *[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Phytolacca americana]] | [[Category: Phytolacca americana]] | ||
| - | + | [[Category: Fujii H]] | |
| - | [[Category: Fujii | + | [[Category: Hidaka A]] |
| - | [[Category: Hidaka | + | [[Category: Honjo E]] |
| - | [[Category: Honjo | + | [[Category: Kurokawa H]] |
| - | [[Category: Kurokawa | + | [[Category: Mikami B]] |
| - | [[Category: Mikami | + | [[Category: Monzingo AF]] |
| - | [[Category: Monzingo | + | [[Category: Motoshima H]] |
| - | [[Category: Motoshima | + | [[Category: Robertus JD]] |
| - | [[Category: Robertus | + | [[Category: Sato E]] |
| - | [[Category: Sato | + | [[Category: Watanabe K]] |
| - | [[Category: Watanabe | + | |
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Current revision
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
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Categories: Large Structures | Phytolacca americana | Fujii H | Hidaka A | Honjo E | Kurokawa H | Mikami B | Monzingo AF | Motoshima H | Robertus JD | Sato E | Watanabe K
