1y9b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:01, 15 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y9b.gif|left|200px]]
 
-
{{Structure
+
==Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961==
-
|PDB= 1y9b |SIZE=350|CAPTION= <scene name='initialview01'>1y9b</scene>, resolution 2.20&Aring;
+
<StructureSection load='1y9b' size='340' side='right'caption='[[1y9b]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1y9b]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y9B FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
|GENE= VCA0319 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243277 Vibrio cholerae O1 biovar eltor str. N16961])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y9b OCA], [https://pdbe.org/1y9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y9b RCSB], [https://www.ebi.ac.uk/pdbsum/1y9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y9b ProSAT], [https://www.topsan.org/Proteins/MCSG/1y9b TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9K2J6_VIBCH Q9K2J6_VIBCH]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1Y9B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_eltor_str._n16961 Vibrio cholerae o1 biovar eltor str. n16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y9B OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Vibrio cholerae o1 biovar eltor str. n16961]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y9/1y9b_consurf.spt"</scriptWhenChecked>
-
[[Category: Binkowski, T A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Hatzos, C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y9b ConSurf].
-
[[Category: Moy, S.]]
+
<div style="clear:both"></div>
-
[[Category: Quartey, P.]]
+
__TOC__
-
[[Category: conserved hypothetical protein]]
+
</StructureSection>
-
[[Category: mcsg]]
+
[[Category: Large Structures]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
-
[[Category: protein structure initiative]]
+
[[Category: Binkowski TA]]
-
[[Category: psi]]
+
[[Category: Hatzos C]]
-
[[Category: structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: vibrio cholerae]]
+
[[Category: Moy S]]
-
 
+
[[Category: Quartey P]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:19:59 2008''
+

Current revision

Structure of Conserved Putative Transcriptional Factor from Vibrio cholerae O1 biovar eltor str. N16961

PDB ID 1y9b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools