2vrt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:30, 13 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF E. COLI RNASE E POSSESSING M1 RNA FRAGMENTS - CATALYTIC DOMAIN==
+
 
-
<StructureSection load='2vrt' size='340' side='right' caption='[[2vrt]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
+
==Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain==
 +
<StructureSection load='2vrt' size='340' side='right'caption='[[2vrt]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vrt]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VRT FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vrt]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VRT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VRT FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2bx2|2bx2]], [[2c0b|2c0b]], [[2vmk|2vmk]], [[2c4r|2c4r]], [[1slj|1slj]], [[1sn8|1sn8]], [[2fym|2fym]], [[1smx|1smx]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vrt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vrt RCSB], [http://www.ebi.ac.uk/pdbsum/2vrt PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vrt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vrt OCA], [https://pdbe.org/2vrt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vrt RCSB], [https://www.ebi.ac.uk/pdbsum/2vrt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vrt ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RNE_ECOLI RNE_ECOLI]] Matures 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of colE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in E.coli. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic process.
+
[https://www.uniprot.org/uniprot/RNE_ECOLI RNE_ECOLI] Matures 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of colE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in E.coli. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic process.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrt_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vr/2vrt_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vrt ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 27: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2vrt" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Ribonuclease|Ribonuclease]]
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
*[[Temp|Temp]]
+
-
*[[Temperature value vs. resolution|Temperature value vs. resolution]]
+
-
*[[User:Jaime.Prilusky/Test/tree|User:Jaime.Prilusky/Test/tree]]
+
== References ==
== References ==
<references/>
<references/>
Line 38: Line 37:
</StructureSection>
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Callaghan, A J]]
+
[[Category: Large Structures]]
-
[[Category: Garman, E F]]
+
[[Category: Callaghan AJ]]
-
[[Category: Koslover, D J]]
+
[[Category: Garman EF]]
-
[[Category: Luisi, B F]]
+
[[Category: Koslover DJ]]
-
[[Category: Marcaida, M J]]
+
[[Category: Luisi BF]]
-
[[Category: Martick, M]]
+
[[Category: Marcaida MJ]]
-
[[Category: Scott, W G]]
+
[[Category: Martick M]]
-
[[Category: Endonuclease]]
+
[[Category: Scott WG]]
-
[[Category: Hydrolase]]
+
-
[[Category: M1 rna]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Rna processing]]
+
-
[[Category: Rna turnover]]
+
-
[[Category: Rna-binding]]
+
-
[[Category: Rnase p]]
+

Current revision

Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain

PDB ID 2vrt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vrt"
Personal tools