This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ypf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 25 October 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ypf.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution==
-
|PDB= 1ypf |SIZE=350|CAPTION= <scene name='initialview01'>1ypf</scene>, resolution 1.80&Aring;
+
<StructureSection load='1ypf' size='340' side='right'caption='[[1ypf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1ypf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YPF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YPF FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/GMP_reductase GMP reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.1.7 1.7.1.7]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= guaC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ypf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ypf OCA], [https://pdbe.org/1ypf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ypf RCSB], [https://www.ebi.ac.uk/pdbsum/1ypf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ypf ProSAT]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution'''
+
[https://www.uniprot.org/uniprot/GUAC_BACAN GUAC_BACAN] Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1YPF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YPF OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yp/1ypf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ypf ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus anthracis]]
[[Category: Bacillus anthracis]]
-
[[Category: GMP reductase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Blagova EV]]
-
[[Category: Blagova, E V.]]
+
[[Category: Brannigan JA]]
-
[[Category: Brannigan, J A.]]
+
[[Category: Fogg MJ]]
-
[[Category: Fogg, M J.]]
+
[[Category: Grenha R]]
-
[[Category: Grenha, R.]]
+
[[Category: Levdikov VM]]
-
[[Category: Levdikov, V M.]]
+
[[Category: Wilkinson AJ]]
-
[[Category: SPINE, Structural Proteomics in Europe.]]
+
[[Category: Wilson KS]]
-
[[Category: Wilkinson, A J.]]
+
-
[[Category: Wilson, K S.]]
+
-
[[Category: guac]]
+
-
[[Category: nucleoside]]
+
-
[[Category: nucleotide and nucleoside interconversion]]
+
-
[[Category: nucleotide]]
+
-
[[Category: purine]]
+
-
[[Category: pyrimidine]]
+
-
[[Category: spine]]
+
-
[[Category: structural genomic]]
+
-
[[Category: structural proteomics in europe]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:25:48 2008''
+

Current revision

Crystal Structure of GuaC (BA5705) from Bacillus anthracis at 1.8 A Resolution

PDB ID 1ypf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools