1yw4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:02, 17 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yw4.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the Succinylglutamate Desuccinylase from Chromobacterium violaceum, Northeast Structural Genomics Target CvR22.==
-
|PDB= 1yw4 |SIZE=350|CAPTION= <scene name='initialview01'>1yw4</scene>, resolution 2.00&Aring;
+
<StructureSection load='1yw4' size='340' side='right'caption='[[1yw4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[1yw4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chromobacterium_violaceum_ATCC_12472 Chromobacterium violaceum ATCC 12472]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YW4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YW4 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= astE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536 Chromobacterium violaceum])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yw4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yw4 OCA], [https://pdbe.org/1yw4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yw4 RCSB], [https://www.ebi.ac.uk/pdbsum/1yw4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yw4 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yw4 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure of the Succinylglutamate Desuccinylase from Chromobacterium violaceum, Northeast Structural Genomics Target CvR22.'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/ASTE_CHRVO ASTE_CHRVO] Transforms N(2)-succinylglutamate into succinate and glutamate (By similarity).
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1YW4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Chromobacterium_violaceum Chromobacterium violaceum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YW4 OCA].
+
Check<jmol>
-
[[Category: Chromobacterium violaceum]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1yw4_consurf.spt"</scriptWhenChecked>
-
[[Category: Abashidze, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Acton, T B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Conover, K.]]
+
</jmolCheckbox>
-
[[Category: Forouhar, F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yw4 ConSurf].
-
[[Category: Hunt, J F.]]
+
<div style="clear:both"></div>
-
[[Category: Montelione, G T.]]
+
__TOC__
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
</StructureSection>
-
[[Category: Tong, L.]]
+
[[Category: Chromobacterium violaceum ATCC 12472]]
-
[[Category: ZN]]
+
[[Category: Large Structures]]
-
[[Category: alpha-beta protein]]
+
[[Category: Abashidze M]]
-
[[Category: nesg]]
+
[[Category: Acton TB]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Conover K]]
-
[[Category: protein structure initiative]]
+
[[Category: Forouhar F]]
-
[[Category: psi]]
+
[[Category: Hunt JF]]
-
[[Category: structural genomic]]
+
[[Category: Montelione GT]]
-
 
+
[[Category: Tong L]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:28:13 2008''
+

Current revision

Crystal Structure of the Succinylglutamate Desuccinylase from Chromobacterium violaceum, Northeast Structural Genomics Target CvR22.

PDB ID 1yw4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools