1z67

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 30 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1z67.gif|left|200px]]
 
-
{{Structure
+
==Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri==
-
|PDB= 1z67 |SIZE=350|CAPTION= <scene name='initialview01'>1z67</scene>, resolution 1.45&Aring;
+
<StructureSection load='1z67' size='340' side='right'caption='[[1z67]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NA:SODIUM ION'>NA</scene>
+
<table><tr><td colspan='2'>[[1z67]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457T Shigella flexneri 2a str. 2457T]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z67 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z67 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
|GENE= yidB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=42897 Shigella flexneri 2a])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z67 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z67 OCA], [https://pdbe.org/1z67 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z67 RCSB], [https://www.ebi.ac.uk/pdbsum/1z67 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z67 ProSAT], [https://www.topsan.org/Proteins/MCSG/1z67 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A0A384K8I9_SHIFL A0A384K8I9_SHIFL]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1Z67 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z67 OCA].
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Reference==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z6/1z67_consurf.spt"</scriptWhenChecked>
-
Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif., Osipiuk J, Maltseva N, Dementieva I, Clancy S, Collart F, Joachimiak A, Proteins. 2006 Nov 1;65(2):509-13. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16927377 16927377]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Shigella flexneri 2a]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Clancy, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z67 ConSurf].
-
[[Category: Collart, F.]]
+
<div style="clear:both"></div>
-
[[Category: Dementieva, I.]]
+
__TOC__
-
[[Category: Joachimiak, A.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Maltseva, N.]]
+
[[Category: Shigella flexneri 2a str. 2457T]]
-
[[Category: Osipiuk, J.]]
+
[[Category: Clancy S]]
-
[[Category: NA]]
+
[[Category: Collart F]]
-
[[Category: hypothetical protein]]
+
[[Category: Dementieva I]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Maltseva N]]
-
[[Category: protein structure initiative]]
+
[[Category: Osipiuk J]]
-
[[Category: psi]]
+
-
[[Category: shigella flexneri]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:31:40 2008''
+

Current revision

Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri

PDB ID 1z67

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1z67"
Personal tools