4x31

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:46, 10 January 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4x31 is ON HOLD
+
==Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation==
 +
<StructureSection load='4x31' size='340' side='right'caption='[[4x31]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4x31]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_NRC-1 Halobacterium salinarum NRC-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4X31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4X31 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LI1:1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL'>LI1</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4x31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4x31 OCA], [https://pdbe.org/4x31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4x31 RCSB], [https://www.ebi.ac.uk/pdbsum/4x31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4x31 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Lipidic cubic phases (LCPs) have emerged as successful matrixes for the crystallization of membrane proteins. Moreover, the viscous LCP also provides a highly effective delivery medium for serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs). Here, the adaptation of this technology to perform serial millisecond crystallography (SMX) at more widely available synchrotron microfocus beamlines is described. Compared with conventional microcrystallography, LCP-SMX eliminates the need for difficult handling of individual crystals and allows for data collection at room temperature. The technology is demonstrated by solving a structure of the light-driven proton-pump bacteriorhodopsin (bR) at a resolution of 2.4 A. The room-temperature structure of bR is very similar to previous cryogenic structures but shows small yet distinct differences in the retinal ligand and proton-transfer pathway.
-
Authors: Nogly, P., James, D., Wang, D., White, T., Zatsepin, N., Shilova, A., Nelson, G., Liu, H., Johansson, L., Heymann, M., Jaeger, K., Metz, M., Wickstrand, C., Wu, W., Baath, P., Berntsen, P., Oberthuer, D., Panneels, V., Cherezov, V., Chapman, H., Spence, J., Schertler, G., Neutze, R., Moraes, I., Burghammer, M., Standfuss, J., Weierstall, U.
+
Lipidic cubic phase serial millisecond crystallography using synchrotron radiation.,Nogly P, James D, Wang D, White TA, Zatsepin N, Shilova A, Nelson G, Liu H, Johansson L, Heymann M, Jaeger K, Metz M, Wickstrand C, Wu W, Bath P, Berntsen P, Oberthuer D, Panneels V, Cherezov V, Chapman H, Schertler G, Neutze R, Spence J, Moraes I, Burghammer M, Standfuss J, Weierstall U IUCrJ. 2015 Jan 27;2(Pt 2):168-76. doi: 10.1107/S2052252514026487. eCollection, 2015 Mar 1. PMID:25866654<ref>PMID:25866654</ref>
-
Description:
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Chapman, H]]
+
<div class="pdbe-citations 4x31" style="background-color:#fffaf0;"></div>
-
[[Category: Wu, W]]
+
 
-
[[Category: Oberthuer, D]]
+
==See Also==
-
[[Category: White, T]]
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
[[Category: Berntsen, P]]
+
== References ==
-
[[Category: Burghammer, M]]
+
<references/>
-
[[Category: Shilova, A]]
+
__TOC__
-
[[Category: Wang, D]]
+
</StructureSection>
-
[[Category: Weierstall, U]]
+
[[Category: Halobacterium salinarum NRC-1]]
-
[[Category: Wickstrand, C]]
+
[[Category: Large Structures]]
-
[[Category: Liu, H]]
+
[[Category: Baath P]]
-
[[Category: Moraes, I]]
+
[[Category: Berntsen P]]
-
[[Category: Panneels, V]]
+
[[Category: Burghammer M]]
-
[[Category: Zatsepin, N]]
+
[[Category: Chapman H]]
-
[[Category: Heymann, M]]
+
[[Category: Cherezov V]]
-
[[Category: Metz, M]]
+
[[Category: Heymann M]]
-
[[Category: Nogly, P]]
+
[[Category: Jaeger K]]
-
[[Category: Schertler, G]]
+
[[Category: James D]]
-
[[Category: Johansson, L]]
+
[[Category: Johansson L]]
-
[[Category: Nelson, G]]
+
[[Category: Liu H]]
-
[[Category: James, D]]
+
[[Category: Metz M]]
-
[[Category: Baath, P]]
+
[[Category: Moraes I]]
-
[[Category: Neutze, R]]
+
[[Category: Nelson G]]
-
[[Category: Jaeger, K]]
+
[[Category: Neutze R]]
-
[[Category: Standfuss, J]]
+
[[Category: Nogly P]]
-
[[Category: Spence, J]]
+
[[Category: Oberthuer D]]
-
[[Category: Cherezov, V]]
+
[[Category: Panneels V]]
 +
[[Category: Schertler G]]
 +
[[Category: Shilova A]]
 +
[[Category: Spence J]]
 +
[[Category: Standfuss J]]
 +
[[Category: Wang D]]
 +
[[Category: Weierstall U]]
 +
[[Category: White T]]
 +
[[Category: Wickstrand C]]
 +
[[Category: Wu W]]
 +
[[Category: Zatsepin N]]

Current revision

Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation

PDB ID 4x31

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools