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1opo

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==THE STRUCTURE OF CARNATION MOTTLE VIRUS==
==THE STRUCTURE OF CARNATION MOTTLE VIRUS==
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<StructureSection load='1opo' size='340' side='right' caption='[[1opo]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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<StructureSection load='1opo' size='340' side='right'caption='[[1opo]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1opo]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Carnation_mottle_virus Carnation mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OPO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OPO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1opo]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Carnation_mottle_virus Carnation mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OPO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2tbv|2tbv]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1opo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1opo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1opo RCSB], [http://www.ebi.ac.uk/pdbsum/1opo PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1opo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1opo OCA], [https://pdbe.org/1opo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1opo RCSB], [https://www.ebi.ac.uk/pdbsum/1opo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1opo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/COAT_CARMV COAT_CARMV]] Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins. Also acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs (By similarity).
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[https://www.uniprot.org/uniprot/CAPSD_CARMV CAPSD_CARMV] Capsid protein self-assembles to form an icosahedral capsid with a T=3 symmetry, about 32-35 nm in diameter, and consisting of 180 capsid proteins. Also acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/1opo_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/1opo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1opo ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 1opo" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[Virus coat protein|Virus coat protein]]
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Carnation mottle virus]]
[[Category: Carnation mottle virus]]
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[[Category: Dauter, Z]]
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[[Category: Large Structures]]
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[[Category: Fry, E]]
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[[Category: Dauter Z]]
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[[Category: Mikhailov, A M]]
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[[Category: Fry E]]
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[[Category: Morgunova, E]]
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[[Category: Mikhailov AM]]
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[[Category: Stuart, D]]
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[[Category: Morgunova E]]
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[[Category: Vainshtein, B K]]
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[[Category: Stel'mashchuk V]]
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[[Category: Wilson, K S]]
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[[Category: Stuart D]]
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[[Category: Mashchuk, V Stel]]
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[[Category: Vainshtein BK]]
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[[Category: Carmovirus]]
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[[Category: Wilson KS]]
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[[Category: Icosahedral virus]]
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[[Category: Plant virus]]
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[[Category: Tomato bushy stunt virus]]
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[[Category: Virus]]
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[[Category: Virus/viral protein]]
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Current revision

THE STRUCTURE OF CARNATION MOTTLE VIRUS

PDB ID 1opo

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