This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4gc5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:47, 26 October 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
 +
==Crystal structure of murine TFB1M==
==Crystal structure of murine TFB1M==
-
<StructureSection load='4gc5' size='340' side='right' caption='[[4gc5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='4gc5' size='340' side='right'caption='[[4gc5]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4gc5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GC5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GC5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4gc5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GC5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gc5 OCA], [https://pdbe.org/4gc5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gc5 RCSB], [https://www.ebi.ac.uk/pdbsum/4gc5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gc5 ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4gc9|4gc9]]</td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tfb1m ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gc5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gc5 RCSB], [http://www.ebi.ac.uk/pdbsum/4gc5 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/TFB1M_MOUSE TFB1M_MOUSE]] S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity (By similarity).
+
[https://www.uniprot.org/uniprot/TFB1M_MOUSE TFB1M_MOUSE] S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 17:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4gc5" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Garcia-Diaz, M]]
+
[[Category: Garcia-Diaz M]]
-
[[Category: Guja, K E]]
+
[[Category: Guja KE]]
-
[[Category: Hambardjieva, E]]
+
[[Category: Hambardjieva E]]
-
[[Category: Karzai, A W]]
+
[[Category: Karzai AW]]
-
[[Category: Mejia, E]]
+
[[Category: Mejia E]]
-
[[Category: Shi, H]]
+
[[Category: Shi H]]
-
[[Category: Venkataraman, K]]
+
[[Category: Venkataraman K]]
-
[[Category: Yakubovskaya, E]]
+
[[Category: Yakubovskaya E]]
-
[[Category: Methylation]]
+
-
[[Category: Methyltransferase fold]]
+
-
[[Category: Mitochondria]]
+
-
[[Category: Rrna methyltransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of murine TFB1M

PDB ID 4gc5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4gc5"
Personal tools