This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pz3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:35, 1 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS-analogue 14==
==Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS-analogue 14==
-
<StructureSection load='3pz3' size='340' side='right' caption='[[3pz3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3pz3' size='340' side='right'caption='[[3pz3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3pz3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PZ3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3pz3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PZ3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PZ3:4-({(3R)-7-(5-FORMYLFURAN-2-YL)-4-[(4-METHOXYPHENYL)SULFONYL]-1-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-2,3,4,5-TETRAHYDRO-1H-1,4-BENZODIAZEPIN-3-YL}METHYL)PHENYL+BENZYLCARBAMATE'>PZ3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pz1|3pz1]], [[3pz2|3pz2]], [[3pz4|3pz4]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PZ3:4-({(3R)-7-(5-FORMYLFURAN-2-YL)-4-[(4-METHOXYPHENYL)SULFONYL]-1-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-2,3,4,5-TETRAHYDRO-1H-1,4-BENZODIAZEPIN-3-YL}METHYL)PHENYL+BENZYLCARBAMATE'>PZ3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rabggta, Ggta ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), Rabggtb, Ggtb ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pz3 OCA], [https://pdbe.org/3pz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pz3 RCSB], [https://www.ebi.ac.uk/pdbsum/3pz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pz3 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein_geranylgeranyltransferase_type_II Protein geranylgeranyltransferase type II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.60 2.5.1.60] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pz3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pz3 RCSB], [http://www.ebi.ac.uk/pdbsum/3pz3 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PGTA_RAT PGTA_RAT]] Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively. [[http://www.uniprot.org/uniprot/PGTB2_RAT PGTB2_RAT]] Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
+
[https://www.uniprot.org/uniprot/PGTA_RAT PGTA_RAT] Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
==See Also==
==See Also==
-
*[[Geranylgeranyl transferase|Geranylgeranyl transferase]]
+
*[[Geranylgeranyl transferase 3D structures|Geranylgeranyl transferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Protein geranylgeranyltransferase type II]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Alexandrov, K]]
+
[[Category: Alexandrov K]]
-
[[Category: Blankenfeldt, W]]
+
[[Category: Blankenfeldt W]]
-
[[Category: Bon, R S]]
+
[[Category: Bon RS]]
-
[[Category: Goody, R S]]
+
[[Category: Goody RS]]
-
[[Category: Guo, Z]]
+
[[Category: Guo Z]]
-
[[Category: Stigter, E A]]
+
[[Category: Stigter EA]]
-
[[Category: Waldmann, H]]
+
[[Category: Waldmann H]]
-
[[Category: Chimera protein]]
+
-
[[Category: Fusion protein]]
+
-
[[Category: Protein prenylation]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+

Current revision

Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS-analogue 14

PDB ID 3pz3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools