This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wj7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:42, 9 May 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Solution structure of RSGI RUH-015, a UBA domain from mouse cDNA==
==Solution structure of RSGI RUH-015, a UBA domain from mouse cDNA==
-
<StructureSection load='1wj7' size='340' side='right' caption='[[1wj7]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='1wj7' size='340' side='right'caption='[[1wj7]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1wj7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WJ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WJ7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1wj7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WJ7 FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wj7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wj7 RCSB], [http://www.ebi.ac.uk/pdbsum/1wj7 PDBsum], [http://www.topsan.org/Proteins/RSGI/1wj7 TOPSAN]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wj7 OCA], [https://pdbe.org/1wj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wj7 RCSB], [https://www.ebi.ac.uk/pdbsum/1wj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wj7 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wj7 TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/UBP2L_MOUSE UBP2L_MOUSE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/1wj7_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/1wj7_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wj7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Hamada, T]]
+
[[Category: Hamada T]]
-
[[Category: Hirota, H]]
+
[[Category: Hirota H]]
-
[[Category: Kigawa, T]]
+
[[Category: Kigawa T]]
-
[[Category: Koshiba, S]]
+
[[Category: Koshiba S]]
-
[[Category: Structural genomic]]
+
[[Category: Saito K]]
-
[[Category: Saito, K]]
+
[[Category: Yokoyama S]]
-
[[Category: Yokoyama, S]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Uba domain]]
+
-
[[Category: Ubiquitin associated domain]]
+
-
[[Category: Unknown function]]
+

Current revision

Solution structure of RSGI RUH-015, a UBA domain from mouse cDNA

PDB ID 1wj7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools