2xct
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == | + | |
| - | <StructureSection load='2xct' size='340' side='right' caption='[[2xct]], [[Resolution|resolution]] 3.35Å' scene=''> | + | ==The twinned 3.35A structure of S. aureus Gyrase complex with Ciprofloxacin and DNA== |
| + | <StructureSection load='2xct' size='340' side='right'caption='[[2xct]], [[Resolution|resolution]] 3.35Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2xct]] is a 12 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2xct]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XCT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XCT FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPF:1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC+ACID'>CPF</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPF:1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC+ACID'>CPF</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xct FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xct OCA], [https://pdbe.org/2xct PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xct RCSB], [https://www.ebi.ac.uk/pdbsum/2xct PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xct ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [https://www.uniprot.org/uniprot/GYRA_STAAN GYRA_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.[HAMAP-Rule:MF_01897][https://www.uniprot.org/uniprot/GYRB_STAAN GYRB_STAAN] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xc/2xct_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xc/2xct_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xct ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 28: | Line 28: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2xct" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Gyrase|Gyrase]] | + | *[[Gyrase 3D Structures|Gyrase 3D Structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Staphylococcus aureus]] | + | [[Category: Large Structures]] |
| - | [[Category: Bax | + | [[Category: Staphylococcus aureus subsp. aureus N315]] |
| - | [[Category: Brown | + | [[Category: Synthetic construct]] |
| - | [[Category: Chan | + | [[Category: Bax BD]] |
| - | [[Category: Eggleston | + | [[Category: Brown KK]] |
| - | [[Category: Fosberry | + | [[Category: Chan P]] |
| - | [[Category: Gentry | + | [[Category: Eggleston DS]] |
| - | [[Category: Giordano | + | [[Category: Fosberry A]] |
| - | [[Category: Gorrec | + | [[Category: Gentry DR]] |
| - | [[Category: Gwynn | + | [[Category: Giordano I]] |
| - | [[Category: Hann | + | [[Category: Gorrec F]] |
| - | [[Category: Hennessy | + | [[Category: Gwynn MN]] |
| - | [[Category: Hibbs | + | [[Category: Hann MM]] |
| - | [[Category: Huang | + | [[Category: Hennessy A]] |
| - | [[Category: Jones | + | [[Category: Hibbs M]] |
| - | [[Category: Jones | + | [[Category: Huang J]] |
| - | [[Category: Lewis | + | [[Category: Jones E]] |
| - | [[Category: May | + | [[Category: Jones J]] |
| - | [[Category: Pearson | + | [[Category: Lewis CJ]] |
| - | [[Category: Shen | + | [[Category: May E]] |
| - | [[Category: Shillings | + | [[Category: Pearson ND]] |
| - | [[Category: Singh | + | [[Category: Shen C]] |
| - | [[Category: Spitzfaden | + | [[Category: Shillings A]] |
| - | [[Category: Theobald | + | [[Category: Singh O]] |
| - | [[Category: Wohlkonig | + | [[Category: Spitzfaden C]] |
| - | + | [[Category: Theobald A]] | |
| + | [[Category: Wohlkonig A]] | ||
Current revision
The twinned 3.35A structure of S. aureus Gyrase complex with Ciprofloxacin and DNA
| |||||||||||
Categories: Large Structures | Staphylococcus aureus subsp. aureus N315 | Synthetic construct | Bax BD | Brown KK | Chan P | Eggleston DS | Fosberry A | Gentry DR | Giordano I | Gorrec F | Gwynn MN | Hann MM | Hennessy A | Hibbs M | Huang J | Jones E | Jones J | Lewis CJ | May E | Pearson ND | Shen C | Shillings A | Singh O | Spitzfaden C | Theobald A | Wohlkonig A
