This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3tfy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:27, 14 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Naa50p amino-terminal acetyltransferase bound to substrate peptide fragment and CoA==
==Naa50p amino-terminal acetyltransferase bound to substrate peptide fragment and CoA==
-
<StructureSection load='3tfy' size='340' side='right' caption='[[3tfy]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
+
<StructureSection load='3tfy' size='340' side='right'caption='[[3tfy]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3tfy]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TFY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3TFY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3tfy]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3TFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3TFY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2psw|2psw]], [[2ob0|2ob0]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MAK3, NAA50, NAT13, NAT5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3tfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tfy OCA], [https://pdbe.org/3tfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3tfy RCSB], [https://www.ebi.ac.uk/pdbsum/3tfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3tfy ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3tfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3tfy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3tfy RCSB], [http://www.ebi.ac.uk/pdbsum/3tfy PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NAA50_HUMAN NAA50_HUMAN]] Probable catalytic component of the NAA11-NAA15 complex which displays alpha (N-terminal) acetyltransferase activity.<ref>PMID:16507339</ref>
+
[https://www.uniprot.org/uniprot/NAA50_HUMAN NAA50_HUMAN] Probable catalytic component of the NAA11-NAA15 complex which displays alpha (N-terminal) acetyltransferase activity.<ref>PMID:16507339</ref>
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
The cotranslational modification of N-terminal acetylation is ubiquitous among eukaryotes and has been reported to have a wide range of biological effects. The human N-terminal acetyltransferase (NAT) Naa50p (NAT5/SAN) acetylates the alpha-amino group of proteins containing an N-terminal methionine residue and is essential for proper sister chromatid cohesion and chromosome condensation. The elevated activity of NATs has also been correlated with cancer, making these enzymes attractive therapeutic targets. We report the X-ray crystal structure of Naa50p bound to a native substrate peptide fragment and coenzyme A. We find that the peptide backbone of the substrate is anchored to the protein through a series of backbone hydrogen bonds with the first methionine residue specified through multiple van der Waals contacts, together creating an alpha-amino methionine-specific pocket. We also employ structure-based mutagenesis that supports the importance of the alpha-amino methionine-specific pocket of Naa50p and is consistent with the proposal that conserved histidine and tyrosine residues play important catalytic roles. Superposition of the ternary Naa50p complex with the peptide-bound Gcn5 histone acetyltransferase (HAT) reveals that the two enzymes share a GNAT (Gcn5-related N-acetyltransferase) fold, but differ in their respective substrate binding grooves such that Naa50p can accommodate only an alpha-amino substrate and not a side-chain lysine substrate that is acetylated by lysine acetyltransferase (KAT) enzymes such as Gcn5. The structure of the ternary Naa50p complex also provides the first molecular scaffold for the design of NAT specific small molecule inhibitors with possible therapeutic applications.
+
-
 
+
-
Structure of a ternary Naa50p (NAT5/SAN) N{alpha}-terminal acetyltransferase complex reveals the molecular basis for substrate specific acetylation.,Liszczak G, Arnesen T, Marmorstein R J Biol Chem. 2011 Sep 6. PMID:21900231<ref>PMID:21900231</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
== References ==
== References ==
<references/>
<references/>
Line 23: Line 15:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Liszczak, G P]]
+
[[Category: Large Structures]]
-
[[Category: Marmorstein, R]]
+
[[Category: Liszczak GP]]
-
[[Category: Gnat family]]
+
[[Category: Marmorstein R]]
-
[[Category: Transferase]]
+

Current revision

Naa50p amino-terminal acetyltransferase bound to substrate peptide fragment and CoA

PDB ID 3tfy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3tfy"
Personal tools