4dkx

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==Crystal Structure of the Rab 6A'(Q72L)==
==Crystal Structure of the Rab 6A'(Q72L)==
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<StructureSection load='4dkx' size='340' side='right' caption='[[4dkx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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<StructureSection load='4dkx' size='340' side='right'caption='[[4dkx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4dkx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DKX FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4dkx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DKX FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RAB6A, RAB6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dkx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4dkx RCSB], [http://www.ebi.ac.uk/pdbsum/4dkx PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dkx OCA], [https://pdbe.org/4dkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dkx RCSB], [https://www.ebi.ac.uk/pdbsum/4dkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dkx ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RAB6A_HUMAN RAB6A_HUMAN]] Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.
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[https://www.uniprot.org/uniprot/RAB6A_HUMAN RAB6A_HUMAN] Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Ras small G protein-superfamily is a family of GTP hydrolases whose activity is regulated by GTP/GDP binding states. Rab6A, a member of the Ras superfamily, is involved in the regulation of vesicle trafficking, which is critical for endocytosis, biosynthesis, secretion, cell differentiation and cell growth. Rab6A exists in two isoforms, termed RabA and Rab6A'. Substitution of Gln72 to Leu72 (Q72L) at Rab6 family blocks GTP hydrolysis activity and this mutation usually causes the Rab6 protein to be constitutively in an active form. Here, we report the crystal structure of the human Rab6A'(Q72L) mutant form at 1.9A resolution. Unexpectedly, we found that Rab6A'(Q72L) possesses GDP/Mg(2+) in the GTP binding pockets, which is formed by a flexible switch I and switch II. Large conformational changes were also detected in the switch I and switch II regions. Our structure revealed that the non-hydrolysable, constitutively active form of Rab6A' can accommodate GDP/Mg(2+) in the open conformation.
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Crystal structure of Rab6A'(Q72L) mutant reveals unexpected GDP/Mg(2)(+) binding with opened GTP-binding domain.,Shin YC, Yoon JH, Jang TH, Kim SY, Do Heo W, So I, Jeon JH, Park HH Biochem Biophys Res Commun. 2012 Jul 27;424(2):269-73. Epub 2012 Jun 27. PMID:22750005<ref>PMID:22750005</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==See Also==
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</div>
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*[[Ras-related protein Rab 3D structures|Ras-related protein Rab 3D structures]]
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Park, H H]]
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[[Category: Large Structures]]
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[[Category: Shin, Y C]]
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[[Category: Park HH]]
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[[Category: Cytosol]]
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[[Category: Shin Y-C]]
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[[Category: Gtp]]
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[[Category: Gtp binding fold]]
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[[Category: Membrane trafficking]]
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[[Category: Protein transport]]
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Current revision

Crystal Structure of the Rab 6A'(Q72L)

PDB ID 4dkx

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