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3h9n
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==Crystal structure of the ribosome maturation factor rimm (hi0203) from h.influenzae. northeast structural genomics consortium target IR66.== | ==Crystal structure of the ribosome maturation factor rimm (hi0203) from h.influenzae. northeast structural genomics consortium target IR66.== | ||
| - | <StructureSection load='3h9n' size='340' side='right' caption='[[3h9n]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='3h9n' size='340' side='right'caption='[[3h9n]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3h9n]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3h9n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_influenzae"_lehmann_and_neumann_1896 "bacterium influenzae" lehmann and neumann 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H9N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H9N FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HI0203, rimM ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HI0203, rimM ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h9n OCA], [https://pdbe.org/3h9n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h9n RCSB], [https://www.ebi.ac.uk/pdbsum/3h9n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h9n ProSAT], [https://www.topsan.org/Proteins/NESGC/3h9n TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/RIMM_HAEIN RIMM_HAEIN]] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.[HAMAP-Rule:MF_00014] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/3h9n_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h9/3h9n_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h9n ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacterium influenzae lehmann and neumann 1896]] |
| + | [[Category: Large Structures]] | ||
[[Category: Acton, T B]] | [[Category: Acton, T B]] | ||
[[Category: Everett, J K]] | [[Category: Everett, J K]] | ||
| - | [[Category: Hunt,J F]] | + | [[Category: Hunt, J F]] |
| - | [[Category: Kuzin,A]] | + | [[Category: Kuzin, A]] |
| - | [[Category: Maglaqui,M]] | + | [[Category: Maglaqui, M]] |
| - | [[Category: Mao,M]] | + | [[Category: Mao, M]] |
[[Category: Montelione, G T]] | [[Category: Montelione, G T]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
| Line 35: | Line 37: | ||
[[Category: Seetharaman, J]] | [[Category: Seetharaman, J]] | ||
[[Category: Su, M]] | [[Category: Su, M]] | ||
| - | [[Category: Tong,L]] | + | [[Category: Tong, L]] |
| - | [[Category: Xiao,R]] | + | [[Category: Xiao, R]] |
| - | [[Category: Zhao,L]] | + | [[Category: Zhao, L]] |
[[Category: Chaperone]] | [[Category: Chaperone]] | ||
| + | [[Category: Cytoplasm]] | ||
[[Category: Ir66]] | [[Category: Ir66]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
Current revision
Crystal structure of the ribosome maturation factor rimm (hi0203) from h.influenzae. northeast structural genomics consortium target IR66.
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Categories: Bacterium influenzae lehmann and neumann 1896 | Large Structures | Acton, T B | Everett, J K | Hunt, J F | Kuzin, A | Maglaqui, M | Mao, M | Montelione, G T | Structural genomic | Nair, R | Rost, B | Seetharaman, J | Su, M | Tong, L | Xiao, R | Zhao, L | Chaperone | Cytoplasm | Ir66 | Nesg | PSI, Protein structure initiative | Ribosomal protein | Ribosome biogenesis | Rimm
