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2nud

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==The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide==
==The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide==
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<StructureSection load='2nud' size='340' side='right' caption='[[2nud]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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<StructureSection load='2nud' size='340' side='right'caption='[[2nud]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2nud]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._glycinea Pseudomonas syringae pv. glycinea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NUD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NUD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2nud]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] and [https://en.wikipedia.org/wiki/Pseudomonas_savastanoi_pv._glycinea Pseudomonas savastanoi pv. glycinea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NUD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NUD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETF:TRIFLUOROETHANOL'>ETF</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1nh1|1nh1]], [[2nun|2nun]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ETF:TRIFLUOROETHANOL'>ETF</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">avrB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318 Pseudomonas syringae pv. glycinea])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nud OCA], [https://pdbe.org/2nud PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nud RCSB], [https://www.ebi.ac.uk/pdbsum/2nud PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nud ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nud FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nud OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nud RCSB], [http://www.ebi.ac.uk/pdbsum/2nud PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RIN4_ARATH RIN4_ARATH]] Essential regulator of plant defense, which plays a central role in resistance in case of infection by a pathogen. It is a common target for both type III avirulence proteins from P.syringae (AvrB, AvrRpm1 and AvrRpt2) and for the plant Resistance (R) proteins RPM1 and RPS2. In strains carrying the appropriate R gene for avirulence proteins of the pathogen, its association with avirulence proteins triggers a defense system including the hypersensitive response, which limits the spread of disease. In contrast, in plants lacking appropriate R genes, its association with avirulence proteins of the pathogen impairs the defense system and leads to the pathogen multiplication.<ref>PMID:11955429</ref> <ref>PMID:12581526</ref> <ref>PMID:12581527</ref>
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[https://www.uniprot.org/uniprot/AVRB_PSESG AVRB_PSESG]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nu/2nud_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nu/2nud_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nud ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 2nud" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[Avirulence protein|Avirulence protein]]
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*[[Avirulence protein 3D structures|Avirulence protein 3D structures]]
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*[[Type III effector AvrB complexed with a high-affinity RIN4 peptide|Type III effector AvrB complexed with a high-affinity RIN4 peptide]]
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== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Pseudomonas syringae pv. glycinea]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Dangl, J L]]
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[[Category: Large Structures]]
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[[Category: Desveaux, D]]
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[[Category: Pseudomonas savastanoi pv. glycinea]]
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[[Category: McNulty, B]]
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[[Category: Dangl JL]]
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[[Category: Singer, A U]]
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[[Category: Desveaux D]]
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[[Category: Sondek, J]]
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[[Category: McNulty B]]
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[[Category: Wu, A J]]
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[[Category: Singer AU]]
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[[Category: Avrb rin4 high-affinity crystal structure]]
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[[Category: Sondek J]]
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[[Category: Toxin-protein binding complex]]
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[[Category: Wu AJ]]

Current revision

The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide

PDB ID 2nud

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