This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ckr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:27, 22 May 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ckr.jpg|left|200px]]
 
-
{{Structure
+
==X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THERMOBIFIDA FUSCA ENDOGLUCANASE CEL5A (E5) E355Q IN COMPLEX WITH CELLOTETRAOSE==
-
|PDB= 2ckr |SIZE=350|CAPTION= <scene name='initialview01'>2ckr</scene>, resolution 1.77&Aring;
+
<StructureSection load='2ckr' size='340' side='right'caption='[[2ckr]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
-
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Chain+B'>AC1</scene>
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene> and <scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>
+
<table><tr><td colspan='2'>[[2ckr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobifida_fusca Thermobifida fusca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CKR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CKR FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PRD_900016:beta-cellopentaose'>PRD_900016</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ckr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ckr OCA], [https://pdbe.org/2ckr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ckr RCSB], [https://www.ebi.ac.uk/pdbsum/2ckr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ckr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GUN5_THEFU GUN5_THEFU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/2ckr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ckr ConSurf].
 +
<div style="clear:both"></div>
-
'''X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THERMOBIFIDA FUSCA ENDOGLUCANASE CEL5A (E5) E355Q IN COMPLEX WITH CELLOTETRAOSE'''
+
==See Also==
-
 
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2CKR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermobifida_fusca Thermobifida fusca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CKR OCA].
+
[[Category: Large Structures]]
-
[[Category: Cellulase]]
+
-
[[Category: Single protein]]
+
[[Category: Thermobifida fusca]]
[[Category: Thermobifida fusca]]
-
[[Category: Bergfors, T.]]
+
[[Category: Bergfors T]]
-
[[Category: Berglund, G I.]]
+
[[Category: Berglund GI]]
-
[[Category: Gross, L S.]]
+
[[Category: Gross LS]]
-
[[Category: Gualfetti, P J.]]
+
[[Category: Gualfetti PJ]]
-
[[Category: Mitchinson, C.]]
+
[[Category: Mitchinson C]]
-
[[Category: Requadt, C.]]
+
[[Category: Requadt C]]
-
[[Category: Saldajeno, M.]]
+
[[Category: Saldajeno M]]
-
[[Category: Sandgren, M.]]
+
[[Category: Sandgren M]]
-
[[Category: Shaw, A.]]
+
[[Category: Shaw A]]
-
[[Category: BEN]]
+
-
[[Category: NA]]
+
-
[[Category: PG4]]
+
-
[[Category: ZN]]
+
-
[[Category: carbohydrate metabolism]]
+
-
[[Category: cellulose degradation]]
+
-
[[Category: endoglucanase]]
+
-
[[Category: glycosidase]]
+
-
[[Category: glycoside hydrolase family 5]]
+
-
[[Category: hydrolase]]
+
-
[[Category: polysaccharide degradation]]
+
-
[[Category: thermobifida fusca e5]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:16:38 2008''
+

Current revision

X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THERMOBIFIDA FUSCA ENDOGLUCANASE CEL5A (E5) E355Q IN COMPLEX WITH CELLOTETRAOSE

PDB ID 2ckr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ckr"
Personal tools