This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4v4e

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: ==Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with inhibitor 1,2,4,5-tetrahydroxy-benzene== <StructureSection load='4v4e' size='3...)
Current revision (18:03, 20 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with inhibitor 1,2,4,5-tetrahydroxy-benzene==
==Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with inhibitor 1,2,4,5-tetrahydroxy-benzene==
-
<StructureSection load='4v4e' size='340' side='right' caption='[[4v4e]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4v4e' size='340' side='right'caption='[[4v4e]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4v4e]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Pelobacter_acidigallici Pelobacter acidigallici]. This structure supersedes the now removed PDB entries and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vlf 1vlf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V4E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V4E FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4v4e]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Pelobacter_acidigallici Pelobacter acidigallici]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ti6 1ti6] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vlf 1vlf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V4E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V4E FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=BTT:BENZENE-1,2,4,5-TETROL'>BTT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1vlf|1vlf]], [[1ti6|1ti6]], [[1ti2|1ti2]], [[1ti4|1ti4]], [[1vld|1vld]], [[1vle|1vle]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4MO:MOLYBDENUM(IV)+ION'>4MO</scene>, <scene name='pdbligand=BTT:BENZENE-1,2,4,5-TETROL'>BTT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyrogallol_hydroxytransferase Pyrogallol hydroxytransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.2 1.97.1.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v4e OCA], [https://pdbe.org/4v4e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v4e RCSB], [https://www.ebi.ac.uk/pdbsum/4v4e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v4e ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v4e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v4e OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v4e RCSB], [http://www.ebi.ac.uk/pdbsum/4v4e PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PGTL_PELAC PGTL_PELAC]] Isomerisation of pyrogallol to phloroglucin. [[http://www.uniprot.org/uniprot/PGTS_PELAC PGTS_PELAC]] Isomerization of pyrogallol to phloroglucin.
+
[https://www.uniprot.org/uniprot/PGTL_PELAC PGTL_PELAC] Isomerisation of pyrogallol to phloroglucin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4v4e" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pelobacter acidigallici]]
[[Category: Pelobacter acidigallici]]
-
[[Category: Pyrogallol hydroxytransferase]]
+
[[Category: Abt D]]
-
[[Category: Abt, D]]
+
[[Category: Einsle O]]
-
[[Category: Einsle, O]]
+
[[Category: Kroneck PMH]]
-
[[Category: Kroneck, P M.H]]
+
[[Category: Messerschmidt A]]
-
[[Category: Messerschmidt, A]]
+
[[Category: Niessen H]]
-
[[Category: Niessen, H]]
+
[[Category: Schink B]]
-
[[Category: Schink, B]]
+
-
[[Category: 4fe-4s-cluster]]
+
-
[[Category: 5-tetrahydroxy benzene]]
+
-
[[Category: Complex with inhibitor 1]]
+
-
[[Category: Dmso-reductase family]]
+
-
[[Category: Mgd-cofactor]]
+
-
[[Category: Molybdenum binding enzyme]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici complexed with inhibitor 1,2,4,5-tetrahydroxy-benzene

PDB ID 4v4e

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools