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3pn3

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==Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21==
==Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21==
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<StructureSection load='3pn3' size='340' side='right' caption='[[3pn3]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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<StructureSection load='3pn3' size='340' side='right'caption='[[3pn3]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3pn3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PN3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PN3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3pn3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PN3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PN3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PN3:TERT-BUTYL+{(2S)-1-[FORMYL(HYDROXY)AMINO]-3-PHENYLPROPAN-2-YL}CARBAMATE'>PN3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pn2|3pn2]], [[3pn6|3pn6]], [[3pn4|3pn4]], [[3pn5|3pn5]], [[3m6o|3m6o]], [[3o3j|3o3j]], [[3m6q|3m6q]], [[3m6r|3m6r]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PN3:TERT-BUTYL+{(2S)-1-[FORMYL(HYDROXY)AMINO]-3-PHENYLPROPAN-2-YL}CARBAMATE'>PN3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DEF2, PDF1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pn3 OCA], [https://pdbe.org/3pn3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pn3 RCSB], [https://www.ebi.ac.uk/pdbsum/3pn3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pn3 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pn3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pn3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pn3 RCSB], [http://www.ebi.ac.uk/pdbsum/3pn3 PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
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[https://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 3pn3" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Peptide deformylase]]
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[[Category: Large Structures]]
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[[Category: Fieulaine, S]]
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[[Category: Fieulaine S]]
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[[Category: Giglione, C]]
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[[Category: Giglione C]]
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[[Category: Meinnel, T]]
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[[Category: Meinnel T]]
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[[Category: Hydrolase-hydrolase inhibitor complex]]
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[[Category: Induced-fit]]
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[[Category: N-terminal excision pathway]]
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[[Category: Nme]]
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[[Category: Pdf]]
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Current revision

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with inhibitor 21

PDB ID 3pn3

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