This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dv2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:53, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis==
==Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis==
-
<StructureSection load='3dv2' size='340' side='right' caption='[[3dv2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3dv2' size='340' side='right'caption='[[3dv2]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dv2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DV2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dv2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DV2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nadD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nicotinate-nucleotide_adenylyltransferase Nicotinate-nucleotide adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.18 2.7.7.18] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv2 OCA], [https://pdbe.org/3dv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dv2 RCSB], [https://www.ebi.ac.uk/pdbsum/3dv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dv2 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dv2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dv2 RCSB], [http://www.ebi.ac.uk/pdbsum/3dv2 PDBsum]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/Q6HT60_BACAN Q6HT60_BACAN]] Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (By similarity).[HAMAP-Rule:MF_00244]
 
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv2_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/3dv2_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dv2 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 28: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
-
 
+
<div class="pdbe-citations 3dv2" style="background-color:#fffaf0;"></div>
-
==See Also==
+
-
*[[P73|P73]]
+
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Nicotinate-nucleotide adenylyltransferase]]
+
[[Category: Bacillus anthracis]]
-
[[Category: Brouillette, C G]]
+
[[Category: Large Structures]]
-
[[Category: Brouillette, W J]]
+
[[Category: Brouillette CG]]
-
[[Category: DeLucas, L J]]
+
[[Category: Brouillette WJ]]
-
[[Category: Lu, S]]
+
[[Category: DeLucas LJ]]
-
[[Category: McCombs, D P]]
+
[[Category: Lu S]]
-
[[Category: Nagy, L]]
+
[[Category: McCombs DP]]
-
[[Category: Pruett, P S]]
+
[[Category: Nagy L]]
-
[[Category: Smith, C D]]
+
[[Category: Pruett PS]]
-
[[Category: Yang, Z]]
+
[[Category: Smith CD]]
-
[[Category: Alpha and beta protein]]
+
[[Category: Yang Z]]
-
[[Category: Nad]]
+
-
[[Category: Nucleotidyltransferase]]
+
-
[[Category: Pyridine nucleotide biosynthesis]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis

PDB ID 3dv2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dv2"
Personal tools