This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cyd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:45, 13 March 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cyd.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae==
-
|PDB= 2cyd |SIZE=350|CAPTION= <scene name='initialview01'>2cyd</scene>, resolution 2.80&Aring;
+
<StructureSection load='2cyd' size='340' side='right'caption='[[2cyd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene> and <scene name='pdbligand=UMQ:UNDECYL-MALTOSIDE'>UMQ</scene>
+
<table><tr><td colspan='2'>[[2cyd]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYD FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LI:LITHIUM+ION'>LI</scene>, <scene name='pdbligand=UMQ:UNDECYL-MALTOSIDE'>UMQ</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyd OCA], [https://pdbe.org/2cyd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyd RCSB], [https://www.ebi.ac.uk/pdbsum/2cyd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyd ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyd TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NTPK_ENTHA NTPK_ENTHA] Involved in ATP-driven sodium extrusion.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyd ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae'''
+
==See Also==
-
 
+
*[[ATPase 3D structures|ATPase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2CYD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYD OCA].
+
[[Category: Enterococcus hirae]]
[[Category: Enterococcus hirae]]
-
[[Category: H(+)-transporting two-sector ATPase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Kakinuma Y]]
-
[[Category: Kakinuma, Y.]]
+
[[Category: Murata T]]
-
[[Category: Murata, T.]]
+
[[Category: Shirouzu M]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Walker JE]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Yamato I]]
-
[[Category: Walker, J E.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yamato, I.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: LHG]]
+
-
[[Category: LI]]
+
-
[[Category: UMQ]]
+
-
[[Category: enterococcus]]
+
-
[[Category: lithium]]
+
-
[[Category: na(+)-atpase]]
+
-
[[Category: national project on protein structural and functional analyse]]
+
-
[[Category: nppsfa]]
+
-
[[Category: ntpk]]
+
-
[[Category: proteolipid]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: v-atpase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:21:13 2008''
+

Current revision

Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae

PDB ID 2cyd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2cyd"
Personal tools