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3jwd
From Proteopedia
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==Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility== | ==Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility== | ||
| - | <StructureSection load='3jwd' size='340' side='right' caption='[[3jwd]], [[Resolution|resolution]] 2.61Å' scene=''> | + | <StructureSection load='3jwd' size='340' side='right'caption='[[3jwd]], [[Resolution|resolution]] 2.61Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3jwd]] is a 8 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3jwd]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JWD FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.61Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=YCM:S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE'>YCM</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jwd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jwd OCA], [https://pdbe.org/3jwd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jwd RCSB], [https://www.ebi.ac.uk/pdbsum/3jwd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jwd ProSAT]</span></td></tr> | |
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/CD4_HUMAN CD4_HUMAN] Accessory protein for MHC class-II antigen/T-cell receptor interaction. May regulate T-cell activation. Induces the aggregation of lipid rafts. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/3jwd_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/3jwd_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jwd ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3jwd" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Antibody|Antibody]] | + | *[[Antibody 3D structures|Antibody 3D structures]] |
| - | *[[CD4|CD4]] | + | *[[CD4 3D structures|CD4 3D structures]] |
| - | *[[Gp120|Gp120]] | + | *[[Gp120 3D structures|Gp120 3D structures]] |
| + | *[[3D structures of human antibody|3D structures of human antibody]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
[[Category: Human immunodeficiency virus 1]] | [[Category: Human immunodeficiency virus 1]] | ||
| - | [[Category: Ban | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Ban YA]] |
| - | [[Category: Huang | + | [[Category: Chen L]] |
| - | [[Category: Kong | + | [[Category: Huang CC]] |
| - | [[Category: Kwon | + | [[Category: Kong L]] |
| - | [[Category: Kwong | + | [[Category: Kwon YD]] |
| - | [[Category: Majeed | + | [[Category: Kwong PD]] |
| - | [[Category: Pancera | + | [[Category: Majeed S]] |
| - | [[Category: Robinson | + | [[Category: Pancera M]] |
| - | [[Category: Schief | + | [[Category: Robinson JE]] |
| - | [[Category: Sodroski | + | [[Category: Schief WR]] |
| - | [[Category: Stuckey | + | [[Category: Sodroski J]] |
| - | [[Category: Wyatt | + | [[Category: Stuckey J]] |
| - | [[Category: Zhou | + | [[Category: Wyatt R]] |
| - | + | [[Category: Zhou T]] | |
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Current revision
Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility
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Categories: Homo sapiens | Human immunodeficiency virus 1 | Large Structures | Ban YA | Chen L | Huang CC | Kong L | Kwon YD | Kwong PD | Majeed S | Pancera M | Robinson JE | Schief WR | Sodroski J | Stuckey J | Wyatt R | Zhou T

