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3iiu
From Proteopedia
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==Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L== | ==Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L== | ||
| - | <StructureSection load='3iiu' size='340' side='right' caption='[[3iiu]], [[Resolution|resolution]] 1.45Å' scene=''> | + | <StructureSection load='3iiu' size='340' side='right'caption='[[3iiu]], [[Resolution|resolution]] 1.45Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3iiu]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3iiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IIU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=J7Z:(2S)-3-[(6-O-ALPHA-D-GALACTOPYRANOSYL-BETA-D-GALACTOPYRANOSYL)OXY]-2-[(3Z,6Z,9Z,12Z,15Z)-OCTADECA-3,6,9,12,15-PENTAENOYLOXY]PROPYL+(5Z,8Z,11Z,14Z,17Z)-ICOSA-5,8,11,14,17-PENTAENOATE'>J7Z</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=J7Z:(2S)-3-[(6-O-ALPHA-D-GALACTOPYRANOSYL-BETA-D-GALACTOPYRANOSYL)OXY]-2-[(3Z,6Z,9Z,12Z,15Z)-OCTADECA-3,6,9,12,15-PENTAENOYLOXY]PROPYL+(5Z,8Z,11Z,14Z,17Z)-ICOSA-5,8,11,14,17-PENTAENOATE'>J7Z</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iiu OCA], [https://pdbe.org/3iiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iiu RCSB], [https://www.ebi.ac.uk/pdbsum/3iiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iiu ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/PCP1_AMPCA PCP1_AMPCA] Water-soluble antenna for capture of solar energy in the blue-green range. Peridinin is an asymmetric carotenoid. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/3iiu_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/3iiu_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iiu ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3iiu" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Amphidinium | + | [[Category: Amphidinium carterae]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Hofmann E]] |
| - | [[Category: | + | [[Category: Schulte T]] |
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Current revision
Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L
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