This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3aon

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:50, 4 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the central axis (NtpD-NtpG) in the catalytic portion of Enterococcus hirae V-type sodium ATPase==
==Crystal structure of the central axis (NtpD-NtpG) in the catalytic portion of Enterococcus hirae V-type sodium ATPase==
-
<StructureSection load='3aon' size='340' side='right' caption='[[3aon]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3aon' size='340' side='right'caption='[[3aon]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3aon]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AON OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AON FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3aon]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_hirae Enterococcus hirae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AON OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AON FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ntpD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae]), ntpG, ntpQ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1354 Enterococcus hirae])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aon OCA], [https://pdbe.org/3aon PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aon RCSB], [https://www.ebi.ac.uk/pdbsum/3aon PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aon ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aon FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aon OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3aon RCSB], [http://www.ebi.ac.uk/pdbsum/3aon PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NTPG_ENTHR NTPG_ENTHR]] Involved in ATP-driven sodium extrusion.
+
[https://www.uniprot.org/uniprot/NTPD_ENTHA NTPD_ENTHA] Involved in ATP-driven sodium extrusion.<ref>PMID:8157629</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3aon" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[ATPase|ATPase]]
+
*[[ATPase 3D structures|ATPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 27: Line 27:
</StructureSection>
</StructureSection>
[[Category: Enterococcus hirae]]
[[Category: Enterococcus hirae]]
-
[[Category: Arai, S]]
+
[[Category: Large Structures]]
-
[[Category: Hossain, K M.M]]
+
[[Category: Arai S]]
-
[[Category: Ishizuka-Katsura, Y]]
+
[[Category: Hossain KMM]]
-
[[Category: Iwata, S]]
+
[[Category: Ishizuka-Katsura Y]]
-
[[Category: Kakinuma, Y]]
+
[[Category: Iwata S]]
-
[[Category: Murata, T]]
+
[[Category: Kakinuma Y]]
-
[[Category: Saijo, S]]
+
[[Category: Murata T]]
-
[[Category: Shirouzu, M]]
+
[[Category: Saijo S]]
-
[[Category: Terada, T]]
+
[[Category: Shirouzu M]]
-
[[Category: Yamato, I]]
+
[[Category: Terada T]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yamato I]]
-
[[Category: Alpha/beta fold]]
+
[[Category: Yokoyama S]]
-
[[Category: Central axis]]
+
-
[[Category: Coiled-coil]]
+
-
[[Category: Enterococcus]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Ntpa3-ntpb3]]
+
-
[[Category: Ntpc]]
+
-
[[Category: V-atpase]]
+

Current revision

Crystal structure of the central axis (NtpD-NtpG) in the catalytic portion of Enterococcus hirae V-type sodium ATPase

PDB ID 3aon

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3aon"
Personal tools