This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2db0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:47, 13 March 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2db0.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of PH0542==
-
|PDB= 2db0 |SIZE=350|CAPTION= <scene name='initialview01'>2db0</scene>, resolution 2.2&Aring;
+
<StructureSection load='2db0' size='340' side='right'caption='[[2db0]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2db0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DB0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DB0 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2db0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2db0 OCA], [https://pdbe.org/2db0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2db0 RCSB], [https://www.ebi.ac.uk/pdbsum/2db0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2db0 ProSAT], [https://www.topsan.org/Proteins/RSGI/2db0 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of PH0542'''
+
[https://www.uniprot.org/uniprot/O58277_PYRHO O58277_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2DB0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DB0 OCA].
+
<jmolCheckbox>
-
[[Category: Pyrococcus horikoshii]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/2db0_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Handa, N.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Kishishita, S.]]
+
</jmolCheckbox>
-
[[Category: Murayama, K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2db0 ConSurf].
-
[[Category: Nishino, A.]]
+
<div style="clear:both"></div>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
__TOC__
-
[[Category: Shirouzu, M.]]
+
</StructureSection>
-
[[Category: heat repeat]]
+
[[Category: Large Structures]]
-
[[Category: helical structure]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Handa N]]
-
[[Category: nppsfa]]
+
[[Category: Kishishita S]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Murayama K]]
-
[[Category: rsgi]]
+
[[Category: Nishino A]]
-
[[Category: structural genomic]]
+
[[Category: Shirouzu M]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:25:04 2008''
+

Current revision

Crystal structure of PH0542

PDB ID 2db0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools