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2dcj

From Proteopedia

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[[Image:2dcj.jpg|left|200px]]
 
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{{Structure
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==A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1==
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|PDB= 2dcj |SIZE=350|CAPTION= <scene name='initialview01'>2dcj</scene>, resolution 2.24&Aring;
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<StructureSection load='2dcj' size='340' side='right'caption='[[2dcj]], [[Resolution|resolution]] 2.24&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
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<table><tr><td colspan='2'>[[2dcj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._41M-1 Bacillus sp. 41M-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCJ FirstGlance]. <br>
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|ACTIVITY= [http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.24&#8491;</td></tr>
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|GENE= xynJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1409 Bacillus sp.])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dcj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dcj OCA], [https://pdbe.org/2dcj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dcj RCSB], [https://www.ebi.ac.uk/pdbsum/2dcj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dcj ProSAT]</span></td></tr>
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</table>
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'''A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1'''
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== Function ==
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[https://www.uniprot.org/uniprot/Q9RC94_9BACI Q9RC94_9BACI]
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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2DCJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCJ OCA].
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Check<jmol>
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[[Category: Bacillus sp.]]
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<jmolCheckbox>
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[[Category: Endo-1,4-beta-xylanase]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dcj_consurf.spt"</scriptWhenChecked>
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[[Category: Single protein]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dcj ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
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[[Category: Bacillus sp. 41M-1]]
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[[Category: Large Structures]]
[[Category: Ihsanawati]]
[[Category: Ihsanawati]]
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[[Category: Kumasaka, T.]]
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[[Category: Kumasaka T]]
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[[Category: Nakamura, S.]]
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[[Category: Nakamura S]]
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[[Category: Tanaka, N.]]
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[[Category: Tanaka N]]
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[[Category: CA]]
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[[Category: GOL]]
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[[Category: MPD]]
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[[Category: alkaliphilic xylanase]]
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[[Category: beta-jelly roll]]
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[[Category: family 11]]
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[[Category: xylan binding domain (xbm)]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:25:38 2008''
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Current revision

A two-domain structure of alkaliphilic XynJ from Bacillus sp. 41M-1

PDB ID 2dcj

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