This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dna

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:44, 29 May 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dna.jpg|left|200px]]
 
-
{{Structure
+
==Solution Structure of RSGI RUH-056, a UBA domain from mouse cDNA==
-
|PDB= 2dna |SIZE=350|CAPTION= <scene name='initialview01'>2dna</scene>
+
<StructureSection load='2dna' size='340' side='right'caption='[[2dna]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2dna]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DNA FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dna FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dna OCA], [https://pdbe.org/2dna PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dna RCSB], [https://www.ebi.ac.uk/pdbsum/2dna PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dna ProSAT], [https://www.topsan.org/Proteins/RSGI/2dna TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Solution Structure of RSGI RUH-056, a UBA domain from mouse cDNA'''
+
[https://www.uniprot.org/uniprot/UBQLN_MOUSE UBQLN_MOUSE]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2DNA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DNA OCA].
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dn/2dna_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dna ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Single protein]]
+
[[Category: Hayashi F]]
-
[[Category: Hayashi, F.]]
+
[[Category: Hirota H]]
-
[[Category: Hirota, H.]]
+
[[Category: Ruhul Momen AZM]]
-
[[Category: Momen, A Z.M Ruhul.]]
+
[[Category: Yokoyama S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: dsk2 protein]]
+
-
[[Category: national project on protein structural and functional analyse]]
+
-
[[Category: nppsfa]]
+
-
[[Category: proteasome]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: ubiquitin associated domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:29:12 2008''
+

Current revision

Solution Structure of RSGI RUH-056, a UBA domain from mouse cDNA

PDB ID 2dna

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools