2dsl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:29, 25 October 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dsl.jpg|left|200px]]
 
-
{{Structure
+
==Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8==
-
|PDB= 2dsl |SIZE=350|CAPTION= <scene name='initialview01'>2dsl</scene>, resolution 1.70&Aring;
+
<StructureSection load='2dsl' size='340' side='right'caption='[[2dsl]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene> and <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
+
<table><tr><td colspan='2'>[[2dsl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DSL FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dsl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dsl OCA], [https://pdbe.org/2dsl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dsl RCSB], [https://www.ebi.ac.uk/pdbsum/2dsl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dsl ProSAT], [https://www.topsan.org/Proteins/RSGI/2dsl TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5SJP3_THET8 Q5SJP3_THET8]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2DSL is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DSL OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Thermus thermophilus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/2dsl_consurf.spt"</scriptWhenChecked>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Shimizu, K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: CL]]
+
</jmolCheckbox>
-
[[Category: MG]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dsl ConSurf].
-
[[Category: hot dog fold]]
+
<div style="clear:both"></div>
-
[[Category: national project on protein structural and functional analyse]]
+
__TOC__
-
[[Category: nppsfa]]
+
</StructureSection>
-
[[Category: phenylacetic acid degradation]]
+
[[Category: Large Structures]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: rsgi]]
+
[[Category: Shimizu K]]
-
[[Category: structural genomic]]
+
-
[[Category: thioesterase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:31:01 2008''
+

Current revision

Mutant N33D structure of phenylacetic acid degradation protein PaaI from Thermus thermophilus HB8

PDB ID 2dsl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools