This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2duy
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2duy.jpg|left|200px]] | ||
| - | + | ==Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8== | |
| - | + | <StructureSection load='2duy' size='340' side='right'caption='[[2duy]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2duy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DUY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DUY FirstGlance]. <br> |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |
| - | | | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2duy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2duy OCA], [https://pdbe.org/2duy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2duy RCSB], [https://www.ebi.ac.uk/pdbsum/2duy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2duy ProSAT], [https://www.topsan.org/Proteins/RSGI/2duy TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | ''' | + | == Evolutionary Conservation == |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | == | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/2duy_consurf.spt"</scriptWhenChecked> | |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: Chen, L | + | </jmolCheckbox> |
| - | [[Category: Ebihara, A | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2duy ConSurf]. |
| - | [[Category: Liu, Z J | + | <div style="clear:both"></div> |
| - | [[Category: Niwa, H | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: Shimada, A | + | [[Category: Large Structures]] |
| - | [[Category: Wang, B C | + | [[Category: Thet8]] |
| - | [[Category: Yokoyama, S | + | [[Category: Chen, L]] |
| - | [[Category: | + | [[Category: Ebihara, A]] |
| - | + | [[Category: Liu, Z J]] | |
| - | [[Category: | + | [[Category: Niwa, H]] |
| - | [[Category: | + | [[Category: Structural genomic]] |
| - | [[Category: | + | [[Category: Shimada, A]] |
| - | [[Category: | + | [[Category: Wang, B C]] |
| - | + | [[Category: Yokoyama, S]] | |
| - | + | [[Category: Helix-hairpin-helix]] | |
| - | + | [[Category: National project on protein structural and functional analyse]] | |
| - | + | [[Category: Nppsfa]] | |
| + | [[Category: Rsgi]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8
| |||||||||||
