2dx6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 30 October 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dx6.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8==
-
|PDB= 2dx6 |SIZE=350|CAPTION= <scene name='initialview01'>2dx6</scene>, resolution 1.78&Aring;
+
<StructureSection load='2dx6' size='340' side='right'caption='[[2dx6]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene> and <scene name='pdbligand=IPA:ISOPROPYL ALCOHOL'>IPA</scene>
+
<table><tr><td colspan='2'>[[2dx6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DX6 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dx6 OCA], [https://pdbe.org/2dx6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dx6 RCSB], [https://www.ebi.ac.uk/pdbsum/2dx6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dx6 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dx6 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5SM11_THET8 Q5SM11_THET8]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2DX6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DX6 OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Thermus thermophilus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/2dx6_consurf.spt"</scriptWhenChecked>
-
[[Category: Kishishita, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Kuramitsu, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Murayama, K.]]
+
</jmolCheckbox>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dx6 ConSurf].
-
[[Category: Shirouzu, M.]]
+
<div style="clear:both"></div>
-
[[Category: Terada, T.]]
+
__TOC__
-
[[Category: Yokoyama, S.]]
+
</StructureSection>
-
[[Category: ACT]]
+
[[Category: Large Structures]]
-
[[Category: IPA]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: conserved hypothetical protein]]
+
[[Category: Kishishita S]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Kuramitsu S]]
-
[[Category: nppsfa]]
+
[[Category: Murayama K]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Shirouzu M]]
-
[[Category: rsgi]]
+
[[Category: Terada T]]
-
[[Category: structural genomic]]
+
[[Category: Yokoyama S]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:32:44 2008''
+

Current revision

Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8

PDB ID 2dx6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2dx6"
Personal tools