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2y67

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==NEW 5-BENZYLIDENETHIAZOLIDINE-4-ONE INHIBITORS OF BACTERIAL MURD LIGASE: DESIGN, SYNTHESIS, CRYSTAL STRUCTURES, AND BIOLOGICAL EVALUATION==
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<StructureSection load='2y67' size='340' side='right' caption='[[2y67]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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==New 5-Benzylidenethiazolidine-4-one Inhibitors of Bacterial MurD Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation==
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<StructureSection load='2y67' size='340' side='right'caption='[[2y67]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2y67]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y67 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2Y67 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2y67]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Y67 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Y67 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=N21:(2R)-2-[[4-[[4-[(Z)-(2,4-DIOXO-1,3-THIAZOLIDIN-5-YLIDENE)METHYL]PHENOXY]METHYL]PHENYL]SULFONYLAMINO]PENTANEDIOIC+ACID'>N21</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=N21:(2R)-2-[[4-[[4-[(Z)-(2,4-DIOXO-1,3-THIAZOLIDIN-5-YLIDENE)METHYL]PHENOXY]METHYL]PHENYL]SULFONYLAMINO]PENTANEDIOIC+ACID'>N21</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2uuo|2uuo]], [[2jfg|2jfg]], [[4uag|4uag]], [[2uag|2uag]], [[3uag|3uag]], [[1e0d|1e0d]], [[2vte|2vte]], [[2jff|2jff]], [[1eeh|1eeh]], [[2x5o|2x5o]], [[2wjp|2wjp]], [[2vtd|2vtd]], [[2y1o|2y1o]], [[1uag|1uag]], [[2jfh|2jfh]], [[2uup|2uup]], [[2y66|2y66]], [[2y68|2y68]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2y67 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y67 OCA], [https://pdbe.org/2y67 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2y67 RCSB], [https://www.ebi.ac.uk/pdbsum/2y67 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2y67 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/UDP-N-acetylmuramoyl-L-alanine--D-glutamate_ligase UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.9 6.3.2.9] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2y67 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2y67 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2y67 RCSB], [http://www.ebi.ac.uk/pdbsum/2y67 PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/MURD_ECOLI MURD_ECOLI]] Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).[HAMAP-Rule:MF_00639]
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[https://www.uniprot.org/uniprot/MURD_ECOLI MURD_ECOLI] Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).[HAMAP-Rule:MF_00639]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 2y67" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[MurD ligase|MurD ligase]]
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*[[Mur ligase|Mur ligase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Escherichia coli]]
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[[Category: Escherichia coli K-12]]
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[[Category: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase]]
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[[Category: Large Structures]]
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[[Category: Blanot, D]]
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[[Category: Blanot D]]
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[[Category: Contreras-Martel, C]]
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[[Category: Contreras-Martel C]]
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[[Category: Dessen, A]]
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[[Category: Dessen A]]
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[[Category: Gobec, S]]
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[[Category: Gobec S]]
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[[Category: Kikelj, D]]
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[[Category: Kikelj D]]
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[[Category: Kovac, A]]
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[[Category: Kovac A]]
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[[Category: Muller-Premru, M]]
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[[Category: Muller-Premru M]]
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[[Category: Patin, D]]
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[[Category: Patin D]]
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[[Category: Peterlin-Masic, L]]
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[[Category: Peterlin-Masic L]]
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[[Category: Sink, R]]
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[[Category: Sink R]]
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[[Category: Tomasic, T]]
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[[Category: Tomasic T]]
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[[Category: Zega, A]]
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[[Category: Zega A]]
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[[Category: Zidar, N]]
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[[Category: Zidar N]]
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[[Category: Atp-binding]]
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[[Category: Cell cycle]]
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[[Category: Cell division]]
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[[Category: Cell shape]]
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[[Category: Cell wall]]
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[[Category: Cell wall biogenesis/degradation]]
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[[Category: Ligase]]
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[[Category: Nucleotide-binding]]
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[[Category: Peptidoglycan synthesis]]
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[[Category: Uma]]
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Current revision

New 5-Benzylidenethiazolidine-4-one Inhibitors of Bacterial MurD Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation

PDB ID 2y67

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