4jum

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:49, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of H5N1 influenza virus hemagglutinin, clade 4==
==Crystal structure of H5N1 influenza virus hemagglutinin, clade 4==
-
<StructureSection load='4jum' size='340' side='right' caption='[[4jum]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4jum' size='340' side='right'caption='[[4jum]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4jum]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JUM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4jum]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/goose/Guiyang/337/2006(H5N1)) Influenza A virus (A/goose/Guiyang/337/2006(H5N1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JUM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JUM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.997&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jum OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jum RCSB], [http://www.ebi.ac.uk/pdbsum/4jum PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jum OCA], [https://pdbe.org/4jum PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jum RCSB], [https://www.ebi.ac.uk/pdbsum/4jum PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jum ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0FFQ6_9INFA A0FFQ6_9INFA]] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore (By similarity).[RuleBase:RU003324][SAAS:SAAS000149_004_327643]
+
[https://www.uniprot.org/uniprot/A0FFQ6_9INFA A0FFQ6_9INFA] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore (By similarity).[RuleBase:RU003324][SAAS:SAAS000149_004_327643]
 +
 
 +
==See Also==
 +
*[[Hemagglutinin 3D structures|Hemagglutinin 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Coop, T]]
+
[[Category: Large Structures]]
-
[[Category: DuBois, R M]]
+
[[Category: Coop T]]
-
[[Category: Heath, R J]]
+
[[Category: DuBois RM]]
-
[[Category: Reddivari, M]]
+
[[Category: Heath RJ]]
-
[[Category: Russell, C J]]
+
[[Category: Reddivari M]]
-
[[Category: White, S W]]
+
[[Category: Russell CJ]]
-
[[Category: Zaraket, H]]
+
[[Category: White SW]]
-
[[Category: Glycosylation]]
+
[[Category: Zaraket H]]
-
[[Category: Hemagglutinin]]
+
-
[[Category: Sialic acid]]
+
-
[[Category: Viral envelope protein]]
+
-
[[Category: Viral fusion protein]]
+
-
[[Category: Viral protein]]
+

Current revision

Crystal structure of H5N1 influenza virus hemagglutinin, clade 4

PDB ID 4jum

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4jum"
Personal tools