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2eb4

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Crystal structure of apo-HpcG

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Retrieved from "http://52.214.119.220/wiki/index.php/2eb4"

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-[[Image:2eb4.jpg|left|200px]]
- {{Structure
+==Crystal structure of apo-HpcG==
-|PDB= 2eb4 |SIZE=350|CAPTION= <scene name='initialview01'>2eb4</scene>, resolution 1.60&Aring;
+<StructureSection load='2eb4' size='340' side='right'caption='[[2eb4]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene> and <scene name='pdbligand=NA:SODIUM ION'>NA</scene>
+<table><tr><td colspan='2'>[[2eb4]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EB4 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-|GENE= hpcG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eb4 OCA], [https://pdbe.org/2eb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eb4 RCSB], [https://www.ebi.ac.uk/pdbsum/2eb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eb4 ProSAT]</span></td></tr>
+</table>
-'''Crystal structure of apo-HpcG'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q46982_ECOLX Q46982_ECOLX]
+== Evolutionary Conservation ==
-==Overview==
+[[Image:Consurf_key_small.gif|200px|right]]
-HpcG catalyses the hydration of a carbon-carbon double bond without the aid of any cofactor other than a simple divalent metal ion such as Mg(2+). Since the substrate has a nearby carbonyl group, it is believed that it first isomerises to form a pair of conjugated double bonds in the enol tautomer before Michael addition of water. Previous chemical studies of the reaction, and that of the related enzyme MhpD, have failed to provide a clear picture of the mechanism. The substrate itself is unstable, preventing co-crystallisation or soaking of crystals, but oxalate is a strong competitive inhibitor. We have solved the crystal structure of the protein in the apo form, and with magnesium and oxalate bound. Modelling substrate into the active site suggests the attacking water molecule is not part of the metal coordination shell, in contrast to a previous proposal. Our model suggests that geometrically strained cis isomer intermediates do not lie on the reaction pathway, and that separate groups are involved in the isomerisation and hydration steps.
+Check<jmol>
+  <jmolCheckbox>
-==About this Structure==
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eb/2eb4_consurf.spt"</scriptWhenChecked>
-EB4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EB4 OCA].
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==Reference==
+  </jmolCheckbox>
-Structure and mechanism of HpcG, a hydratase in the homoprotocatechuate degradation pathway of Escherichia coli., Izumi A, Rea D, Adachi T, Unzai S, Park SY, Roper DI, Tame JR, J Mol Biol. 2007 Jul 27;370(5):899-911. Epub 2007 May 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17559873 17559873]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eb4 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Adachi, T.]]
+[[Category: Adachi T]]
-[[Category: Izumi, A.]]
+[[Category: Izumi A]]
-[[Category: Park, S Y.]]
+[[Category: Park SY]]
-[[Category: Rea, D.]]
+[[Category: Rea D]]
-[[Category: Roper, D I.]]
+[[Category: Roper DI]]
-[[Category: Tame, J R.H.]]
+[[Category: Tame JRH]]
-[[Category: Unzai, S.]]
+[[Category: Unzai S]]
-[[Category: NA]]
-[[Category: SCN]]
-[[Category: hydratase]]
-[[Category: lyase]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 16:37:41 2008''

2eb4

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Crystal structure of apo-HpcG

Structural highlights

Function

Evolutionary Conservation

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